View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0571_high_12 (Length: 479)

Name: NF0571_high_12
Description: NF0571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0571_high_12
NF0571_high_12
[»] chr8 (14 HSPs)
chr8 (161-467)||(41722059-41722366)
chr8 (163-232)||(14999169-14999238)
chr8 (163-232)||(41403994-41404063)
chr8 (163-230)||(16324844-16324911)
chr8 (163-230)||(43801705-43801772)
chr8 (163-235)||(15009092-15009164)
chr8 (163-230)||(6911029-6911096)
chr8 (163-230)||(16325080-16325147)
chr8 (163-230)||(43801470-43801537)
chr8 (163-229)||(41403760-41403826)
chr8 (163-230)||(8489373-8489440)
chr8 (163-222)||(22781063-22781122)
chr8 (163-197)||(6911263-6911297)
chr8 (163-231)||(9133899-9133968)
[»] chr2 (13 HSPs)
chr2 (163-230)||(29893031-29893098)
chr2 (163-231)||(4371453-4371521)
chr2 (163-230)||(22563210-22563277)
chr2 (163-230)||(21265563-21265630)
chr2 (163-214)||(12232579-12232630)
chr2 (163-230)||(21265796-21265863)
chr2 (163-230)||(22563444-22563511)
chr2 (163-230)||(17200078-17200145)
chr2 (163-232)||(34645780-34645849)
chr2 (163-230)||(34645547-34645614)
chr2 (178-214)||(33491417-33491453)
chr2 (193-232)||(33491327-33491366)
chr2 (163-229)||(4682757-4682823)
[»] chr7 (9 HSPs)
chr7 (163-231)||(35207177-35207245)
chr7 (163-231)||(25048258-25048326)
chr7 (163-230)||(19318453-19318520)
chr7 (163-230)||(35207409-35207476)
chr7 (163-232)||(39983871-39983940)
chr7 (163-230)||(19318382-19318449)
chr7 (163-214)||(29474646-29474697)
chr7 (163-230)||(2834433-2834500)
chr7 (163-230)||(35363318-35363385)
[»] chr1 (13 HSPs)
chr1 (163-231)||(24883202-24883270)
chr1 (166-230)||(24882971-24883035)
chr1 (8-54)||(26777790-26777836)
chr1 (163-229)||(27171800-27171866)
chr1 (163-228)||(34969987-34970052)
chr1 (163-223)||(49777057-49777117)
chr1 (163-230)||(3385308-3385375)
chr1 (163-230)||(3385545-3385612)
chr1 (163-230)||(49776819-49776886)
chr1 (163-229)||(33401090-33401156)
chr1 (163-214)||(33156688-33156739)
chr1 (163-230)||(34622559-34622626)
chr1 (163-227)||(39781073-39781137)
[»] chr5 (10 HSPs)
chr5 (163-239)||(31193956-31194032)
chr5 (163-230)||(31194199-31194266)
chr5 (163-232)||(36955301-36955370)
chr5 (163-231)||(14076903-14076971)
chr5 (163-230)||(17370067-17370134)
chr5 (163-214)||(36955528-36955579)
chr5 (163-230)||(8754658-8754725)
chr5 (163-204)||(43449493-43449534)
chr5 (163-214)||(32347131-32347182)
chr5 (163-197)||(42546583-42546617)
[»] chr4 (17 HSPs)
chr4 (7-54)||(49923238-49923285)
chr4 (163-230)||(50544256-50544323)
chr4 (163-230)||(54316063-54316130)
chr4 (163-230)||(7061972-7062039)
chr4 (166-214)||(42475892-42475940)
chr4 (163-225)||(46993072-46993134)
chr4 (165-232)||(9551461-9551528)
chr4 (163-230)||(11789859-11789926)
chr4 (163-230)||(17914982-17915049)
chr4 (165-230)||(24673957-24674022)
chr4 (163-227)||(23655302-23655366)
chr4 (163-202)||(5466083-5466122)
chr4 (171-214)||(21785940-21785983)
chr4 (161-214)||(3556382-3556435)
chr4 (163-228)||(5465855-5465920)
chr4 (163-203)||(8538361-8538401)
chr4 (163-202)||(51959733-51959773)
[»] chr3 (13 HSPs)
chr3 (163-230)||(8799317-8799384)
chr3 (163-230)||(38499819-38499886)
chr3 (163-229)||(4041417-4041483)
chr3 (163-231)||(38500055-38500123)
chr3 (163-225)||(53197217-53197279)
chr3 (163-223)||(43797586-43797646)
chr3 (163-214)||(43797368-43797419)
chr3 (163-231)||(53196987-53197055)
chr3 (163-202)||(46883646-46883685)
chr3 (163-205)||(25349944-25349986)
chr3 (163-229)||(43797875-43797941)
chr3 (193-230)||(29828685-29828722)
chr3 (163-231)||(48346213-48346281)
[»] chr6 (3 HSPs)
chr6 (163-232)||(22748586-22748655)
chr6 (163-235)||(16125517-16125589)
chr6 (163-204)||(24197709-24197750)


Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 161 - 467
Target Start/End: Original strand, 41722059 - 41722366
Alignment:
Q  161 caacatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactcctcaaccccaccctcaaaattgaaagggta 260  Q
    ||||||||||||||||||| | ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  41722059 caacatgtcttgcatccaagctctaaataaagtaaatagagcttagcctaaatgaaacatacccgaactcctcaaccccaccattaaaattgaaagggta 41722158  T
Q  261 gaatgcagataacaaagaaatagatagctctgttacannnnnnnnn-aatgaatgggtattctttaatcacgactatgaagattaatatctcaaaccagc 359  Q
    |||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41722159 gaatgcagataacaaagaaatagatagctctgttacattatttttttaatgaatgggtattctttaatcacgactatgaagattaatatctcaaaccagc 41722258  T
Q  360 taaggctacaatagatggcaaagttcttcttcacgagatttgtctagcatgaatttgattactataactaattaactatattaggtatgtttgaggtaat 459  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||    
T  41722259 taaggctacaatagatggcaaagttcttcttcacgagatttgtctagcatgagtttgattactataattaattaactatattagatatgtttgaggtaat 41722358  T
Q  460 tgtatatt 467  Q
    ||||||||    
T  41722359 tgtatatt 41722366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 14999238 - 14999169
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactcct 232  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||| ||||||||||    
T  14999238 acatgtcttgcatccaaaccctaaatggagtaaattgagcttagcctaaatggagcatatccgaactcct 14999169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 41403994 - 41404063
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactcct 232  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||| | ||||||| |||||||    
T  41403994 acatgtcttgcatccaaaccctaaatagagtaaattgaacttaacctaaatggagcatacccaaactcct 41404063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 16324911 - 16324844
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 230  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||| | ||| |||||||||    
T  16324911 acatgtcttgcatccaaaccctaaatggattaaattgagcttagcctaaatggagcatgcccgaactc 16324844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 43801705 - 43801772
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 230  Q
    |||| |||||||||||||| |||||| |||||||| |||||||||||||||| |||||||||||||||    
T  43801705 acatatcttgcatccaaactctaaatggagtaaatggagcttagcctaaatggaacatacccgaactc 43801772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 15009092 - 15009164
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactcctcaa 235  Q
    ||||||||| |||||||||||||||| ||||||||  ||||||||||||||| | ||||||||||||| ||||    
T  15009092 acatgtcttacatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcatacccgaactcatcaa 15009164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 6911096 - 6911029
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 230  Q
    ||||||||| |||||||||||||||| |||||||| |||||||||||||||| | |||||| ||||||    
T  6911096 acatgtcttacatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacctgaactc 6911029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 16325080 - 16325147
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 230  Q
    |||||||||||||||||||||||||| |||||||| ||| || || |||||||| ||||| |||||||    
T  16325080 acatgtcttgcatccaaaccctaaatggagtaaatggagtttggcttaaatgaagcatactcgaactc 16325147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 43801537 - 43801470
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 230  Q
    ||||||||| ||||||||| |||||| ||||||||  || |||||||||||||| |||||||||||||    
T  43801537 acatgtcttacatccaaactctaaatggagtaaatgaagtttagcctaaatgaagcatacccgaactc 43801470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 41403826 - 41403760
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaact 229  Q
    |||| |||| |||| ||| ||||||| ||||||||||||||||  ||||||||| ||||||||||||    
T  41403826 acatatcttacatcaaaatcctaaatggagtaaattgagcttaatctaaatgaagcatacccgaact 41403760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 8489440 - 8489373
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 230  Q
    ||||||||| |||||||||||||||| || |||||  |||||| |||||||| | ||||||| |||||    
T  8489440 acatgtcttacatccaaaccctaaatggaataaatgaagcttaacctaaatggagcatacccaaactc 8489373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 22781122 - 22781063
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatac 222  Q
    ||||| |||||||||||||||| ||| ||||||||  || ||||||||||| ||||||||    
T  22781122 acatgccttgcatccaaaccctgaatggagtaaatgaagtttagcctaaataaaacatac 22781063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 197
Target Start/End: Original strand, 6911263 - 6911297
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaat 197  Q
    |||||||||||||||||||||||||| ||||||||    
T  6911263 acatgtcttgcatccaaaccctaaatggagtaaat 6911297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 9133968 - 9133899
Alignment:
Q  163 acatgtcttgcatccaaa-ccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactcc 231  Q
    ||||||| |||||||||| |||||||| |||||||||||||||  |||||||  | ||||||| ||||||    
T  9133968 acatgtcatgcatccaaatccctaaatggagtaaattgagctttacctaaatagagcatacccaaactcc 9133899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 29893031 - 29893098
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 230  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||    
T  29893031 acatgtcttgcatccaaaccctaaatagagtaaatagagcttagcctaaatggagcatacccgaactc 29893098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 4371521 - 4371453
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactcc 231  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||| | ||||||||||||||    
T  4371521 acatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacccgaactcc 4371453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 22563277 - 22563210
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 230  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||| | |||||||||||||    
T  22563277 acatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacccgaactc 22563210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 21265630 - 21265563
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 230  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||| | ||||||| |||||    
T  21265630 acatgtcttgcatccaaaccctaaatggagtaaattgagcttagtctaaatggagcataccctaactc 21265563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 163 - 214
Target Start/End: Complemental strand, 12232630 - 12232579
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatg 214  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  12232630 acatgtcttacatccaaaccctaaatagagtaaatggagcttagcctaaatg 12232579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 21265796 - 21265863
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 230  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||  | ||||| |||||||    
T  21265796 acatgtcttgcatccaaaccctaaatagagtaaatggagcttagcttaaatagagcatactcgaactc 21265863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 22563444 - 22563511
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 230  Q
    |||||||||||||||||| ||||||| |||||||| ||| |||||||||||| | |||||||||||||    
T  22563444 acatgtcttgcatccaaatcctaaatggagtaaatggagtttagcctaaatggagcatacccgaactc 22563511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 17200145 - 17200078
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 230  Q
    ||||||||| |||||||| ||||||| |||||||| |||||| ||||||||| | |||||||||||||    
T  17200145 acatgtcttacatccaaatcctaaatggagtaaatggagctttgcctaaatggagcatacccgaactc 17200078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 34645780 - 34645849
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactcct 232  Q
    ||||||||| |||||||||||||||| || ||||| ||| | |||||||||| || ||||||||||||||    
T  34645780 acatgtcttacatccaaaccctaaatggaataaatggagttaagcctaaatggaatatacccgaactcct 34645849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 34645614 - 34645547
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 230  Q
    |||||||||||||||| ||||||||| |||||||| || |||| |||||||  | |||||||||||||    
T  34645614 acatgtcttgcatccataccctaaatggagtaaatagaacttaacctaaatagagcatacccgaactc 34645547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 33491417 - 33491453
Alignment:
Q  178 aaaccctaaatagagtaaattgagcttagcctaaatg 214  Q
    |||||||||||||||||||| ||||||||||||||||    
T  33491417 aaaccctaaatagagtaaatggagcttagcctaaatg 33491453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 232
Target Start/End: Complemental strand, 33491366 - 33491327
Alignment:
Q  193 taaattgagcttagcctaaatgaaacatacccgaactcct 232  Q
    ||||| |||||||||||||||| |||||||||||||||||    
T  33491366 taaatggagcttagcctaaatggaacatacccgaactcct 33491327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 4682823 - 4682757
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaact 229  Q
    |||||||||||||| |||| |||||| ||||||||  ||||||   |||||| ||||||||||||||    
T  4682823 acatgtcttgcatctaaactctaaatggagtaaatgaagcttaaattaaatggaacatacccgaact 4682757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 35207245 - 35207177
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactcc 231  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||| || |||||||||||||    
T  35207245 acatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggaatatacccgaactcc 35207177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 25048258 - 25048326
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactcc 231  Q
    |||||||||||||||||| |||||||  ||||||| |||||||||||||||| | ||||||||||||||    
T  25048258 acatgtcttgcatccaaatcctaaatgaagtaaatggagcttagcctaaatggagcatacccgaactcc 25048326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 19318453 - 19318520
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 230  Q
    |||||||||||||| ||||| ||||| |||||||| |||||||||||||||| | |||||||||||||    
T  19318453 acatgtcttgcatctaaaccttaaatggagtaaatggagcttagcctaaatggagcatacccgaactc 19318520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 35207409 - 35207476
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 230  Q
    |||||||||||||||||||||||||| |||||||| ||| |||||||||||| | |||| ||||||||    
T  35207409 acatgtcttgcatccaaaccctaaatggagtaaatggagtttagcctaaatggagcatatccgaactc 35207476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 39983871 - 39983940
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactcct 232  Q
    |||||||||||||||||||||||||| |||||||| |||||| ||||||||| | |||||  ||||||||    
T  39983871 acatgtcttgcatccaaaccctaaatggagtaaatggagcttcgcctaaatggagcatacatgaactcct 39983940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 19318382 - 19318449
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 230  Q
    |||||||||||||| ||||| ||||| ||||||||  ||||||||||||||| | |||||||||||||    
T  19318382 acatgtcttgcatctaaaccttaaatggagtaaatgaagcttagcctaaatggagcatacccgaactc 19318449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 29474646 - 29474697
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatg 214  Q
    ||||||||||||||||| | ||||||||||||||| ||| ||||||||||||    
T  29474646 acatgtcttgcatccaagctctaaatagagtaaatggagtttagcctaaatg 29474697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 2834433 - 2834500
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 230  Q
    |||||| ||| ||||||||||||||| || ||||| || ||||||||||||| | ||||||| |||||    
T  2834433 acatgttttgtatccaaaccctaaatggaataaatggaacttagcctaaatggagcatacccaaactc 2834500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 35363385 - 35363318
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 230  Q
    |||||| ||||||| |||| |||||| ||||||||  | ||||||||||||| | |||||||||||||    
T  35363385 acatgtgttgcatctaaactctaaatggagtaaatgaaacttagcctaaatggagcatacccgaactc 35363318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 24883202 - 24883270
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactcc 231  Q
    |||| ||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||    
T  24883202 acatatcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggaacatacccgaactcc 24883270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 24883035 - 24882971
Alignment:
Q  166 tgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 230  Q
    ||||||||||||||||||||||| |||||||| ||| |||||||||||| | |||||||||||||    
T  24883035 tgtcttgcatccaaaccctaaatggagtaaatggagattagcctaaatggagcatacccgaactc 24882971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 26777836 - 26777790
Alignment:
Q  8 gccattgttggatccattctccctggaaaacttgttcctggtgttgt 54  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  26777836 gccattgttggatccattctccctggaaagcttgttcctggtgttgt 26777790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 27171866 - 27171800
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaact 229  Q
    ||||||||| |||||||||| ||||| ||||||||  ||||||||||||||||| ||||||||||||    
T  27171866 acatgtcttacatccaaaccataaatggagtaaatgaagcttagcctaaatgaagcatacccgaact 27171800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 34970052 - 34969987
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaac 228  Q
    |||||||||||||||||| ||||||| |||||||| ||| ||| |||||||||| |||||||||||    
T  34970052 acatgtcttgcatccaaatcctaaattgagtaaatggagtttaacctaaatgaagcatacccgaac 34969987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 49777057 - 49777117
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacc 223  Q
    ||||||||||||||||||||||||||||| ||||| ||| |||||||||||| | ||||||    
T  49777057 acatgtcttgcatccaaaccctaaatagaataaatggagtttagcctaaatggagcatacc 49777117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 3385375 - 3385308
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 230  Q
    ||||||||| |||||||||||||||| | |||||   ||||||||||||||||| |||||||||||||    
T  3385375 acatgtcttacatccaaaccctaaatggggtaaacgaagcttagcctaaatgaagcatacccgaactc 3385308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 3385545 - 3385612
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 230  Q
    |||| |||| |||||||||||||||| |||||||| |||||| ||||||||| | |||||||||||||    
T  3385545 acatatcttacatccaaaccctaaatggagtaaatggagcttggcctaaatggagcatacccgaactc 3385612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 49776886 - 49776819
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 230  Q
    |||||||||||||||||| ||||||| ||||||||  |||||||| |||||| | |||||||||||||    
T  49776886 acatgtcttgcatccaaatcctaaatggagtaaataaagcttagcttaaatggagcatacccgaactc 49776819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 33401090 - 33401156
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaact 229  Q
    ||||||||| |||| ||||| |||||| |||||||||||||||||||||||| | |||| |||||||    
T  33401090 acatgtcttacatctaaaccttaaataaagtaaattgagcttagcctaaatgtagcatatccgaact 33401156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 33156688 - 33156739
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatg 214  Q
    |||||||||| ||||||||||||||| ||||||||  |||||||||||||||    
T  33156688 acatgtcttgtatccaaaccctaaatggagtaaataaagcttagcctaaatg 33156739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 34622559 - 34622626
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 230  Q
    ||||||||||||| |||||| ||||| |||||| | |||||||| ||||||| | |||||||||||||    
T  34622559 acatgtcttgcattcaaaccttaaatggagtaactggagcttagtctaaatggagcatacccgaactc 34622626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 39781137 - 39781073
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaa 227  Q
    |||||||| |||||||||| ||||||  |||||||  | ||||  ||||||||||||||||||||    
T  39781137 acatgtctcgcatccaaactctaaatgaagtaaatgaaacttaatctaaatgaaacatacccgaa 39781073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 31194032 - 31193956
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactcctcaacccc 239  Q
    |||||||||||||||||||| ||||| |||||||| |||||||||||||||| | |||||||||||||  |||||||    
T  31194032 acatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaatggagcatacccgaactcaccaacccc 31193956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 31194199 - 31194266
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 230  Q
    |||||||||||||||||||| ||||| |||||||| |||||||||||||||| | |||||||||||||    
T  31194199 acatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaatggagcatacccgaactc 31194266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 36955370 - 36955301
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactcct 232  Q
    |||||||||||||||||||||||||| ||||||||  ||||||||||||||| | | |||||||||||||    
T  36955370 acatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcctacccgaactcct 36955301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 14076903 - 14076971
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactcc 231  Q
    |||||||||||||||||||||||||| |||||||| || ||||||||||||| | |||| |||||||||    
T  14076903 acatgtcttgcatccaaaccctaaatggagtaaatagaacttagcctaaatggagcatatccgaactcc 14076971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 17370134 - 17370067
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 230  Q
    |||||||||||||||||||||||||| |||||||| ||| ||||| |||||| | |||||||||||||    
T  17370134 acatgtcttgcatccaaaccctaaatggagtaaatggagtttagcataaatggagcatacccgaactc 17370067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 36955528 - 36955579
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatg 214  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  36955528 acatgtcttgcaaccaaaccctaaatagagtaaatagagcttagcctaaatg 36955579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 8754725 - 8754658
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 230  Q
    ||||||||| ||||||||||||||||||||||||| ||| |||| ||||||| |  ||||||||||||    
T  8754725 acatgtcttccatccaaaccctaaatagagtaaatggagtttagtctaaatggaggatacccgaactc 8754658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 43449534 - 43449493
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagctt 204  Q
    |||||||||||||||||| |||||||||| ||||||||||||    
T  43449534 acatgtcttgcatccaaagcctaaatagactaaattgagctt 43449493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 32347131 - 32347182
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatg 214  Q
    ||||||||| |||||||||| ||||| |||||| | ||||||||||||||||    
T  32347131 acatgtcttacatccaaaccttaaatggagtaattggagcttagcctaaatg 32347182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 197
Target Start/End: Original strand, 42546583 - 42546617
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaat 197  Q
    |||||||||||||||||||||||||| ||||||||    
T  42546583 acatgtcttgcatccaaaccctaaatggagtaaat 42546617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 49923238 - 49923285
Alignment:
Q  7 ggccattgttggatccattctccctggaaaacttgttcctggtgttgt 54  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  49923238 ggccattgttggatccattctccctggaaaacttgttcctggtgttgt 49923285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 50544323 - 50544256
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 230  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||| | |||| ||||||||    
T  50544323 acatgtcttgcatccaaaccctaaatagaataaatggagcttagcctaaatggagcatatccgaactc 50544256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 54316063 - 54316130
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 230  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||| | |||||||| ||||    
T  54316063 acatgtcttgcatccaaaccctaaatggagtaaatagagcttagcctaaatggagcatacccggactc 54316130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 7062039 - 7061972
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 230  Q
    |||||||||||||||||||| ||||| |||||||| ||| |||||||||||| | |||||||||||||    
T  7062039 acatgtcttgcatccaaaccataaatggagtaaatagaggttagcctaaatggagcatacccgaactc 7061972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 42475940 - 42475892
Alignment:
Q  166 tgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatg 214  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||    
T  42475940 tgtcttgcatccaaaccctaaatagagtaaatgaagcttagcctaaatg 42475892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 163 - 225
Target Start/End: Complemental strand, 46993134 - 46993072
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccg 225  Q
    |||| |||||||||||||||||||||||| ||||| ||||||| |||||||| | ||||||||    
T  46993134 acatatcttgcatccaaaccctaaatagaataaatggagcttaacctaaatggagcatacccg 46993072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 232
Target Start/End: Original strand, 9551461 - 9551528
Alignment:
Q  165 atgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactcct 232  Q
    ||||||| ||||||| |||||||| |||||||| ||| |||| ||||||| | |||||||||||||||    
T  9551461 atgtcttccatccaagccctaaatggagtaaatggagtttagtctaaatggagcatacccgaactcct 9551528  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 11789926 - 11789859
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 230  Q
    |||| ||||||||| ||||||||||| ||||||||  ||||| ||||||||| | |||||||||||||    
T  11789926 acatatcttgcatctaaaccctaaatggagtaaatgaagctttgcctaaatggagcatacccgaactc 11789859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 17914982 - 17915049
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 230  Q
    |||||||||||||||||||  ||||| |||||||| || ||||||||||||| | |||| ||||||||    
T  17914982 acatgtcttgcatccaaactttaaatggagtaaatggaacttagcctaaatggagcatatccgaactc 17915049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 24673957 - 24674022
Alignment:
Q  165 atgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 230  Q
    ||||||| ||||||||| |||||||||||||||  || |||||||||||| | |||| ||||||||    
T  24673957 atgtcttacatccaaactctaaatagagtaaatgaagtttagcctaaatggagcatatccgaactc 24674022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 23655302 - 23655366
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaa 227  Q
    |||||||||||||| ||||||||||| || |||||  |||||| |||||||| | ||||||||||    
T  23655302 acatgtcttgcatctaaaccctaaatggaataaatgaagcttaacctaaatggagcatacccgaa 23655366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 202
Target Start/End: Original strand, 5466083 - 5466122
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagc 202  Q
    ||||||||| ||||||||||||||||||||||||| ||||    
T  5466083 acatgtcttacatccaaaccctaaatagagtaaatagagc 5466122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 214
Target Start/End: Original strand, 21785940 - 21785983
Alignment:
Q  171 tgcatccaaaccctaaatagagtaaattgagcttagcctaaatg 214  Q
    ||||||||||| |||||| |||||||| ||||||||||||||||    
T  21785940 tgcatccaaactctaaatggagtaaatggagcttagcctaaatg 21785983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 3556435 - 3556382
Alignment:
Q  161 caacatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatg 214  Q
    |||||||||||||||||||||| ||||| ||||||||  || ||||| ||||||    
T  3556435 caacatgtcttgcatccaaaccttaaatggagtaaatgaagtttagcttaaatg 3556382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 5465920 - 5465855
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaac 228  Q
    ||||||||| |||| |||||||||||  |||||||  | ||||||||||||| | |||||||||||    
T  5465920 acatgtcttacatctaaaccctaaatgaagtaaatgaaacttagcctaaatggagcatacccgaac 5465855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 8538361 - 8538401
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagct 203  Q
    |||||||||||||||||||||||||| || ||||| |||||    
T  8538361 acatgtcttgcatccaaaccctaaatggactaaatggagct 8538401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 202
Target Start/End: Original strand, 51959733 - 51959773
Alignment:
Q  163 acatgtcttgcatccaaa-ccctaaatagagtaaattgagc 202  Q
    |||||||||||||||||| ||||||||||| ||||||||||    
T  51959733 acatgtcttgcatccaaacccctaaatagactaaattgagc 51959773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 8799384 - 8799317
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 230  Q
    |||||||||||||||||||||||||| |||||||| |||| ||||||||||| | |||||||||||||    
T  8799384 acatgtcttgcatccaaaccctaaatggagtaaatggagcctagcctaaatggagcatacccgaactc 8799317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 38499886 - 38499819
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 230  Q
    |||||||||| ||||||||||||||| |||||||| |||||||||||||||| | |||||||||||||    
T  38499886 acatgtcttgtatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacccgaactc 38499819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 4041417 - 4041483
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaact 229  Q
    |||||||||||||||||||||||||| ||||||||  ||||||||||||||| | ||||||||||||    
T  4041417 acatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcatacccgaact 4041483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 38500055 - 38500123
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactcc 231  Q
    ||||||||| |||||||||||||| | |||||||| |||||||||||||||| | ||||||||||||||    
T  38500055 acatgtcttacatccaaaccctaattggagtaaatggagcttagcctaaatggagcatacccgaactcc 38500123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 163 - 225
Target Start/End: Original strand, 53197217 - 53197279
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccg 225  Q
    |||||||||||||||||||||||||| ||||||||  ||||||||||||||| | ||||||||    
T  53197217 acatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcatacccg 53197279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 43797586 - 43797646
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacc 223  Q
    ||||||||| ||||||||||||||||||||||||| || ||||||||||||| | ||||||    
T  43797586 acatgtctttcatccaaaccctaaatagagtaaatggatcttagcctaaatggagcatacc 43797646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 214
Target Start/End: Complemental strand, 43797419 - 43797368
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatg 214  Q
    |||||||||||||||||||| ||||| |||||||| ||||||||||||||||    
T  43797419 acatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaatg 43797368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 53197055 - 53196987
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactcc 231  Q
    |||||| ||||||||||||||||||||||||||||  || ||||| ||||||   ||||||||||||||    
T  53197055 acatgttttgcatccaaaccctaaatagagtaaatgaagtttagcttaaatggggcatacccgaactcc 53196987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 202
Target Start/End: Original strand, 46883646 - 46883685
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagc 202  Q
    |||||||||||||||||||||||||| |||||||| ||||    
T  46883646 acatgtcttgcatccaaaccctaaatggagtaaatggagc 46883685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 25349944 - 25349986
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagctta 205  Q
    ||||||||| ||||||||||||||||||| ||||| |||||||    
T  25349944 acatgtcttacatccaaaccctaaatagaataaatggagctta 25349986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 43797875 - 43797941
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaact 229  Q
    ||||||||||||||||| |||||||| |||||||| |  ||||||  ||||||| |||||| |||||    
T  43797875 acatgtcttgcatccaagccctaaatggagtaaatagcacttagcaaaaatgaagcatacctgaact 43797941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 230
Target Start/End: Complemental strand, 29828722 - 29828685
Alignment:
Q  193 taaattgagcttagcctaaatgaaacatacccgaactc 230  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  29828722 taaatggagcttagcctaaatgaagcatacccgaactc 29828685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 48346213 - 48346281
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactcc 231  Q
    |||||| |||||||||||  ||||||| ||||||| || || | |||||||| | ||||||||||||||    
T  48346213 acatgttttgcatccaaattctaaataaagtaaatagaactcaacctaaatggagcatacccgaactcc 48346281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 22748655 - 22748586
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactcct 232  Q
    |||||||||||||||||| | ||||| |||||||| |||| ||||||||||  | |||||||||||||||    
T  22748655 acatgtcttgcatccaaatcttaaatggagtaaatggagcatagcctaaattgagcatacccgaactcct 22748586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 16125589 - 16125517
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactcctcaa 235  Q
    ||||||||||||||||||||||||||  | |||||  || |||||||||||| | ||||||||||||| ||||    
T  16125589 acatgtcttgcatccaaaccctaaatgaaataaatgaagtttagcctaaatggagcatacccgaactcgtcaa 16125517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 24197750 - 24197709
Alignment:
Q  163 acatgtcttgcatccaaaccctaaatagagtaaattgagctt 204  Q
    ||||||||||||||||||  ||||||||| ||||||||||||    
T  24197750 acatgtcttgcatccaaagtctaaatagactaaattgagctt 24197709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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