View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0571_high_16 (Length: 401)

Name: NF0571_high_16
Description: NF0571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0571_high_16
NF0571_high_16
[»] chr3 (20 HSPs)
chr3 (126-391)||(6938652-6938924)
chr3 (169-319)||(6796828-6796992)
chr3 (250-359)||(6527250-6527364)
chr3 (250-359)||(6848831-6848945)
chr3 (66-166)||(6789268-6789370)
chr3 (329-391)||(6549968-6550030)
chr3 (72-163)||(6558718-6558809)
chr3 (167-210)||(6527396-6527439)
chr3 (167-210)||(6848977-6849020)
chr3 (215-247)||(6410959-6410991)
chr3 (64-128)||(6785573-6785637)
chr3 (177-210)||(6558662-6558695)
chr3 (30-59)||(36402331-36402360)
chr3 (30-59)||(39353731-39353760)
chr3 (30-59)||(41182501-41182530)
chr3 (351-391)||(6796780-6796820)
chr3 (31-59)||(6937027-6937055)
chr3 (67-103)||(6938606-6938642)
chr3 (30-58)||(32530406-32530434)
chr3 (30-58)||(40940353-40940381)
[»] scaffold0425 (2 HSPs)
scaffold0425 (252-319)||(11977-12048)
scaffold0425 (167-210)||(12082-12125)
[»] chr5 (11 HSPs)
chr5 (29-59)||(26279655-26279685)
chr5 (30-59)||(3557223-3557252)
chr5 (30-59)||(8298758-8298787)
chr5 (30-59)||(9714805-9714834)
chr5 (30-59)||(12724275-12724304)
chr5 (30-59)||(12785758-12785787)
chr5 (30-59)||(13821592-13821621)
chr5 (30-59)||(18809571-18809600)
chr5 (30-59)||(20337000-20337029)
chr5 (30-59)||(27114904-27114933)
chr5 (30-59)||(38678970-38678999)
[»] chr8 (7 HSPs)
chr8 (30-59)||(6347913-6347942)
chr8 (30-59)||(32338431-32338460)
chr8 (30-59)||(39259810-39259839)
chr8 (30-58)||(13545762-13545790)
chr8 (30-58)||(13678683-13678711)
chr8 (30-58)||(39318105-39318133)
chr8 (30-58)||(43098035-43098063)
[»] chr7 (2 HSPs)
chr7 (30-59)||(44866639-44866668)
chr7 (30-58)||(33951535-33951563)
[»] chr6 (3 HSPs)
chr6 (30-59)||(11975586-11975615)
chr6 (30-59)||(16395921-16395950)
chr6 (30-59)||(31319149-31319178)
[»] chr4 (7 HSPs)
chr4 (30-59)||(6964074-6964103)
chr4 (30-59)||(16024466-16024495)
chr4 (30-59)||(28780280-28780309)
chr4 (30-59)||(33281686-33281715)
chr4 (30-59)||(45925192-45925221)
chr4 (30-59)||(52502009-52502038)
chr4 (31-59)||(55137263-55137291)
[»] chr2 (7 HSPs)
chr2 (30-59)||(1115704-1115733)
chr2 (30-59)||(13279287-13279316)
chr2 (30-59)||(15912311-15912340)
chr2 (30-59)||(17137210-17137239)
chr2 (30-59)||(38208932-38208961)
chr2 (30-59)||(38703093-38703122)
chr2 (30-59)||(44760647-44760676)
[»] chr1 (10 HSPs)
chr1 (30-59)||(12700060-12700089)
chr1 (30-59)||(14586844-14586873)
chr1 (30-59)||(22859271-22859300)
chr1 (30-59)||(27217422-27217451)
chr1 (30-59)||(29961998-29962027)
chr1 (30-59)||(33801932-33801961)
chr1 (30-59)||(50261482-50261511)
chr1 (30-59)||(52631852-52631881)
chr1 (30-58)||(41899785-41899813)
chr1 (30-58)||(48963843-48963871)


Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 126 - 391
Target Start/End: Original strand, 6938652 - 6938924
Alignment:
Q  126 tacgccaatgaactgttgtggctttttgatcagcacagcag------ctaattatgcagatagataaacttattcacaaactgagaaaaagaaatcagaa 219  Q
    |||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6938652 tacgccaatgaactgttgtggctttttgatcagcacagcagaaccttctaattatgcagatagataaacttattcacaaactgagaaaaagaaatcagaa 6938751  T
Q  220 tttagttatgatttgttgatagttttattgaaagtagttttttattgaatttaaattgacaagtcaaattccggtatatgaactacgaaggacatacaaa 319  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  6938752 tttagttatgatttgttgatagttttattgacagtagtgttttattgaatttaaattgacaagtcgaattccggtgtatgaactacgaaggacatacaaa 6938851  T
Q  320 -agtaagaagttgaagtagctgcctgagtcctgacatcacaaaatgcacacctctcgacaatgatattctctg 391  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6938852 gagtaagaagttgaagtagctgcctgagtcctgacatcacaaaatgcacacctctcgacaatgatattctctg 6938924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 169 - 319
Target Start/End: Complemental strand, 6796992 - 6796828
Alignment:
Q  169 aattatgcagatagataaacttattcacaaactgagaaaaagaaat----------cagaatttagttatgatttgttgatagttttattgaaagtagtt 258  Q
    |||||||||||||||||| |||||||||||||||||||||||||||          |||||||||||||||||||||| ||||||||||| || |||||     
T  6796992 aattatgcagatagataagcttattcacaaactgagaaaaagaaatgatttccaaccagaatttagttatgatttgttcatagttttattaaacgtagtg 6796893  T
Q  259 ttttattgaatt----taaattgacaagtcaaattccggtatatgaactacgaaggacatacaaa 319  Q
    ||||||||||||    |||| ||||| ||||| ||||||| ||||||||| |||| |||||||||    
T  6796892 ttttattgaatttcactaaactgacacgtcaacttccggtgtatgaactaggaagaacatacaaa 6796828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 250 - 359
Target Start/End: Complemental strand, 6527364 - 6527250
Alignment:
Q  250 aaagtagttttttattgaattt----aaattgacaagtcaaattccggtatatgaactacgaaggacatacaaa-agtaagaagttgaagtagctgcctg 344  Q
    |||||||| |||||||||||||    ||||||||||||||| ||||||| ||||||||| |||||||||||||| ||||||| |||||||| | ||||||    
T  6527364 aaagtagtgttttattgaatttcactaaattgacaagtcaacttccggtgtatgaactaggaaggacatacaaagagtaagatgttgaagtcgatgcctg 6527265  T
Q  345 agtcctgacatcaca 359  Q
    |||| ||||||||||    
T  6527264 agtcttgacatcaca 6527250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 250 - 359
Target Start/End: Complemental strand, 6848945 - 6848831
Alignment:
Q  250 aaagtagttttttattgaattt----aaattgacaagtcaaattccggtatatgaactacgaaggacatacaaa-agtaagaagttgaagtagctgcctg 344  Q
    |||||||| |||||||||||||    ||||||||||||||| ||||||| ||||||||| |||||||||||||| ||||||| |||||||| | ||||||    
T  6848945 aaagtagtgttttattgaatttcactaaattgacaagtcaacttccggtgtatgaactaggaaggacatacaaagagtaagatgttgaagtggatgcctg 6848846  T
Q  345 agtcctgacatcaca 359  Q
    |||| ||||||||||    
T  6848845 agtcttgacatcaca 6848831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 66 - 166
Target Start/End: Complemental strand, 6789370 - 6789268
Alignment:
Q  66 tgaataatcaaattaca--atgtttaatatattaacttatcctacactcattggagttaacatacgccaatgaactgttgtggctttttgatcagcacag 163  Q
    |||||||| ||||||||  ||| ||||||||| | ||||||||| ||||||| |||||||||| | | ||||||||||||||||||||||||||||||||    
T  6789370 tgaataattaaattacacaatgattaatatatgagcttatcctatactcattagagttaacattcactaatgaactgttgtggctttttgatcagcacag 6789271  T
Q  164 cag 166  Q
    |||    
T  6789270 cag 6789268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 329 - 391
Target Start/End: Complemental strand, 6550030 - 6549968
Alignment:
Q  329 ttgaagtagctgcctgagtcctgacatcacaaaatgcacacctctcgacaatgatattctctg 391  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6550030 ttgaagtggatgcctgagtcctgacatcacaaaatgcacacctctcgacaatgatattctctg 6549968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 72 - 163
Target Start/End: Complemental strand, 6558809 - 6558718
Alignment:
Q  72 atcaaattacaatgtttaatatattaacttatcctacactcattggagttaacatacgccaatgaactgttgtggctttttgatcagcacag 163  Q
    ||||||||||| || ||||||||| | |||||||||||| || |||||||||||||| | |||||||  |||||||||||||||||||||||    
T  6558809 atcaaattacagtgattaatatatgagcttatcctacacccactggagttaacatacactaatgaaccattgtggctttttgatcagcacag 6558718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 210
Target Start/End: Complemental strand, 6527439 - 6527396
Alignment:
Q  167 ctaattatgcagatagataaacttattcacaaactgagaaaaag 210  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||    
T  6527439 ctaatgatgcagaaagataaacttattcacaaactgagaaaaag 6527396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 210
Target Start/End: Complemental strand, 6849020 - 6848977
Alignment:
Q  167 ctaattatgcagatagataaacttattcacaaactgagaaaaag 210  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||    
T  6849020 ctaatgatgcagaaagataaacttattcacaaactgagaaaaag 6848977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 247
Target Start/End: Complemental strand, 6410991 - 6410959
Alignment:
Q  215 cagaatttagttatgatttgttgatagttttat 247  Q
    |||||||||||||||||||||||||||||||||    
T  6410991 cagaatttagttatgatttgttgatagttttat 6410959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 6785637 - 6785573
Alignment:
Q  64 tctgaataatcaaattacaatgtttaatatattaacttatcctacactcattggagttaacatac 128  Q
    |||||||||| | ||  ||||| ||||||||| | |||||||||||||| |||||||||||||||    
T  6785637 tctgaataataagatcgcaatgattaatatatgagcttatcctacactctttggagttaacatac 6785573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 210
Target Start/End: Complemental strand, 6558695 - 6558662
Alignment:
Q  177 agatagataaacttattcacaaactgagaaaaag 210  Q
    |||||||||||| |||||||||||||||||||||    
T  6558695 agatagataaacctattcacaaactgagaaaaag 6558662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Complemental strand, 36402360 - 36402331
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttgg 59  Q
    ||||||||||||||||||||||||||||||    
T  36402360 tcatgtgggtcagtgtggttcttagcttgg 36402331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 39353731 - 39353760
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttgg 59  Q
    ||||||||||||||||||||||||||||||    
T  39353731 tcatgtgggtcagtgtggttcttagcttgg 39353760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 41182501 - 41182530
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttgg 59  Q
    ||||||||||||||||||||||||||||||    
T  41182501 tcatgtgggtcagtgtggttcttagcttgg 41182530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Complemental strand, 6796820 - 6796780
Alignment:
Q  351 gacatcacaaaatgcacacctctcgacaatgatattctctg 391  Q
    ||||||||||||||||| |||||| |||||||| |||||||    
T  6796820 gacatcacaaaatgcacgcctctccacaatgattttctctg 6796780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 59
Target Start/End: Original strand, 6937027 - 6937055
Alignment:
Q  31 catgtgggtcagtgtggttcttagcttgg 59  Q
    |||||||||||||||||||||||||||||    
T  6937027 catgtgggtcagtgtggttcttagcttgg 6937055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 6938606 - 6938642
Alignment:
Q  67 gaataatcaaattacaatgtttaatatattaacttat 103  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  6938606 gaatagtcaaattacaatgtttaatatatgaacttat 6938642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 58
Target Start/End: Original strand, 32530406 - 32530434
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttg 58  Q
    |||||||||||||||||||||||||||||    
T  32530406 tcatgtgggtcagtgtggttcttagcttg 32530434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 58
Target Start/End: Original strand, 40940353 - 40940381
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttg 58  Q
    |||||||||||||||||||||||||||||    
T  40940353 tcatgtgggtcagtgtggttcttagcttg 40940381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 319
Target Start/End: Complemental strand, 12048 - 11977
Alignment:
Q  252 agtagttttttattgaattt----aaattgacaagtcaaattccggtatatgaactacgaaggacatacaaa 319  Q
    |||||| |||||||||||||    ||||||||||||||| ||||||| ||||||||| ||||||||||||||    
T  12048 agtagtgttttattgaatttcactaaattgacaagtcaacttccggtgtatgaactaggaaggacatacaaa 11977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 210
Target Start/End: Complemental strand, 12125 - 12082
Alignment:
Q  167 ctaattatgcagatagataaacttattcacaaactgagaaaaag 210  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||    
T  12125 ctaatgatgcagaaagataaacttattcacaaactgagaaaaag 12082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 59
Target Start/End: Original strand, 26279655 - 26279685
Alignment:
Q  29 atcatgtgggtcagtgtggttcttagcttgg 59  Q
    |||||||||||||||||||||||||||||||    
T  26279655 atcatgtgggtcagtgtggttcttagcttgg 26279685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 3557223 - 3557252
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttgg 59  Q
    ||||||||||||||||||||||||||||||    
T  3557223 tcatgtgggtcagtgtggttcttagcttgg 3557252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Complemental strand, 8298787 - 8298758
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttgg 59  Q
    ||||||||||||||||||||||||||||||    
T  8298787 tcatgtgggtcagtgtggttcttagcttgg 8298758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Complemental strand, 9714834 - 9714805
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttgg 59  Q
    ||||||||||||||||||||||||||||||    
T  9714834 tcatgtgggtcagtgtggttcttagcttgg 9714805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 12724275 - 12724304
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttgg 59  Q
    ||||||||||||||||||||||||||||||    
T  12724275 tcatgtgggtcagtgtggttcttagcttgg 12724304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 12785758 - 12785787
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttgg 59  Q
    ||||||||||||||||||||||||||||||    
T  12785758 tcatgtgggtcagtgtggttcttagcttgg 12785787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Complemental strand, 13821621 - 13821592
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttgg 59  Q
    ||||||||||||||||||||||||||||||    
T  13821621 tcatgtgggtcagtgtggttcttagcttgg 13821592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 18809571 - 18809600
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttgg 59  Q
    ||||||||||||||||||||||||||||||    
T  18809571 tcatgtgggtcagtgtggttcttagcttgg 18809600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Complemental strand, 20337029 - 20337000
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttgg 59  Q
    ||||||||||||||||||||||||||||||    
T  20337029 tcatgtgggtcagtgtggttcttagcttgg 20337000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 27114904 - 27114933
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttgg 59  Q
    ||||||||||||||||||||||||||||||    
T  27114904 tcatgtgggtcagtgtggttcttagcttgg 27114933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Complemental strand, 38678999 - 38678970
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttgg 59  Q
    ||||||||||||||||||||||||||||||    
T  38678999 tcatgtgggtcagtgtggttcttagcttgg 38678970  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 6347913 - 6347942
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttgg 59  Q
    ||||||||||||||||||||||||||||||    
T  6347913 tcatgtgggtcagtgtggttcttagcttgg 6347942  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 32338431 - 32338460
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttgg 59  Q
    ||||||||||||||||||||||||||||||    
T  32338431 tcatgtgggtcagtgtggttcttagcttgg 32338460  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Complemental strand, 39259839 - 39259810
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttgg 59  Q
    ||||||||||||||||||||||||||||||    
T  39259839 tcatgtgggtcagtgtggttcttagcttgg 39259810  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 58
Target Start/End: Complemental strand, 13545790 - 13545762
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttg 58  Q
    |||||||||||||||||||||||||||||    
T  13545790 tcatgtgggtcagtgtggttcttagcttg 13545762  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 58
Target Start/End: Original strand, 13678683 - 13678711
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttg 58  Q
    |||||||||||||||||||||||||||||    
T  13678683 tcatgtgggtcagtgtggttcttagcttg 13678711  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 58
Target Start/End: Complemental strand, 39318133 - 39318105
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttg 58  Q
    |||||||||||||||||||||||||||||    
T  39318133 tcatgtgggtcagtgtggttcttagcttg 39318105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 58
Target Start/End: Complemental strand, 43098063 - 43098035
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttg 58  Q
    |||||||||||||||||||||||||||||    
T  43098063 tcatgtgggtcagtgtggttcttagcttg 43098035  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 44866639 - 44866668
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttgg 59  Q
    ||||||||||||||||||||||||||||||    
T  44866639 tcatgtgggtcagtgtggttcttagcttgg 44866668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 58
Target Start/End: Original strand, 33951535 - 33951563
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttg 58  Q
    |||||||||||||||||||||||||||||    
T  33951535 tcatgtgggtcagtgtggttcttagcttg 33951563  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 11975586 - 11975615
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttgg 59  Q
    ||||||||||||||||||||||||||||||    
T  11975586 tcatgtgggtcagtgtggttcttagcttgg 11975615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 16395921 - 16395950
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttgg 59  Q
    ||||||||||||||||||||||||||||||    
T  16395921 tcatgtgggtcagtgtggttcttagcttgg 16395950  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 31319149 - 31319178
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttgg 59  Q
    ||||||||||||||||||||||||||||||    
T  31319149 tcatgtgggtcagtgtggttcttagcttgg 31319178  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 6964074 - 6964103
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttgg 59  Q
    ||||||||||||||||||||||||||||||    
T  6964074 tcatgtgggtcagtgtggttcttagcttgg 6964103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 16024466 - 16024495
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttgg 59  Q
    ||||||||||||||||||||||||||||||    
T  16024466 tcatgtgggtcagtgtggttcttagcttgg 16024495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Complemental strand, 28780309 - 28780280
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttgg 59  Q
    ||||||||||||||||||||||||||||||    
T  28780309 tcatgtgggtcagtgtggttcttagcttgg 28780280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 33281686 - 33281715
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttgg 59  Q
    ||||||||||||||||||||||||||||||    
T  33281686 tcatgtgggtcagtgtggttcttagcttgg 33281715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 45925192 - 45925221
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttgg 59  Q
    ||||||||||||||||||||||||||||||    
T  45925192 tcatgtgggtcagtgtggttcttagcttgg 45925221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 52502009 - 52502038
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttgg 59  Q
    ||||||||||||||||||||||||||||||    
T  52502009 tcatgtgggtcagtgtggttcttagcttgg 52502038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 59
Target Start/End: Original strand, 55137263 - 55137291
Alignment:
Q  31 catgtgggtcagtgtggttcttagcttgg 59  Q
    |||||||||||||||||||||||||||||    
T  55137263 catgtgggtcagtgtggttcttagcttgg 55137291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 1115704 - 1115733
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttgg 59  Q
    ||||||||||||||||||||||||||||||    
T  1115704 tcatgtgggtcagtgtggttcttagcttgg 1115733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 13279287 - 13279316
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttgg 59  Q
    ||||||||||||||||||||||||||||||    
T  13279287 tcatgtgggtcagtgtggttcttagcttgg 13279316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 15912311 - 15912340
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttgg 59  Q
    ||||||||||||||||||||||||||||||    
T  15912311 tcatgtgggtcagtgtggttcttagcttgg 15912340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Complemental strand, 17137239 - 17137210
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttgg 59  Q
    ||||||||||||||||||||||||||||||    
T  17137239 tcatgtgggtcagtgtggttcttagcttgg 17137210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 38208932 - 38208961
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttgg 59  Q
    ||||||||||||||||||||||||||||||    
T  38208932 tcatgtgggtcagtgtggttcttagcttgg 38208961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Complemental strand, 38703122 - 38703093
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttgg 59  Q
    ||||||||||||||||||||||||||||||    
T  38703122 tcatgtgggtcagtgtggttcttagcttgg 38703093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 44760647 - 44760676
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttgg 59  Q
    ||||||||||||||||||||||||||||||    
T  44760647 tcatgtgggtcagtgtggttcttagcttgg 44760676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Complemental strand, 12700089 - 12700060
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttgg 59  Q
    ||||||||||||||||||||||||||||||    
T  12700089 tcatgtgggtcagtgtggttcttagcttgg 12700060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Complemental strand, 14586873 - 14586844
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttgg 59  Q
    ||||||||||||||||||||||||||||||    
T  14586873 tcatgtgggtcagtgtggttcttagcttgg 14586844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 22859271 - 22859300
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttgg 59  Q
    ||||||||||||||||||||||||||||||    
T  22859271 tcatgtgggtcagtgtggttcttagcttgg 22859300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 27217422 - 27217451
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttgg 59  Q
    ||||||||||||||||||||||||||||||    
T  27217422 tcatgtgggtcagtgtggttcttagcttgg 27217451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 29961998 - 29962027
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttgg 59  Q
    ||||||||||||||||||||||||||||||    
T  29961998 tcatgtgggtcagtgtggttcttagcttgg 29962027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 33801932 - 33801961
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttgg 59  Q
    ||||||||||||||||||||||||||||||    
T  33801932 tcatgtgggtcagtgtggttcttagcttgg 33801961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Complemental strand, 50261511 - 50261482
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttgg 59  Q
    ||||||||||||||||||||||||||||||    
T  50261511 tcatgtgggtcagtgtggttcttagcttgg 50261482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Complemental strand, 52631881 - 52631852
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttgg 59  Q
    ||||||||||||||||||||||||||||||    
T  52631881 tcatgtgggtcagtgtggttcttagcttgg 52631852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 58
Target Start/End: Complemental strand, 41899813 - 41899785
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttg 58  Q
    |||||||||||||||||||||||||||||    
T  41899813 tcatgtgggtcagtgtggttcttagcttg 41899785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 58
Target Start/End: Complemental strand, 48963871 - 48963843
Alignment:
Q  30 tcatgtgggtcagtgtggttcttagcttg 58  Q
    |||||||||||||||||||||||||||||    
T  48963871 tcatgtgggtcagtgtggttcttagcttg 48963843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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