View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0571_high_18 (Length: 381)
Name: NF0571_high_18
Description: NF0571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0571_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 11 - 335
Target Start/End: Complemental strand, 49923564 - 49923238
Alignment:
| Q |
11 |
acaatatcaaacatttaaatttaaaattaacaccaatttgataagcaaactgaattattaatacaaattaggcaaacacttacagcaggaaatacaaatt |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49923564 |
acaaaatcaaacatttaaatttaaaattaacaccaattcgataagcaaactgaattattaatacaaattaggcaaacacttacagcaggaaatacaaatt |
49923465 |
T |
|
| Q |
111 |
ccatcttggcactgatccaaagaaatccaacgaacagaacaagagaaaacaaacct-nnnnnnnnttgcaaataaagtcaaatctccatcataaggaaca |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
49923464 |
ccatcttggcactgatccaaagaaatccaacgaacagaacaagagaaaacaaacctaatttttttttgctaataaagtcaaatctccatcataaggaaca |
49923365 |
T |
|
| Q |
210 |
ag-nnnnnnncaaatacaaattaacaaagacagtaaccaaccattgcatggataatgaagacgagtagaatcagagagaacaacaccaggaacaagtttt |
308 |
Q |
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| T |
49923364 |
agaaaaaaaacaaatacaaattaacaaagacagtaaccaaccattgcatcgataatgaagacgagtagaatcagagagaacaacaccaggaacaagtttt |
49923265 |
T |
|
| Q |
309 |
ccagggagaatggatccaacaatggcc |
335 |
Q |
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||||||||||||||||||||||||||| |
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| T |
49923264 |
ccagggagaatggatccaacaatggcc |
49923238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 71 - 334
Target Start/End: Original strand, 26777576 - 26777836
Alignment:
| Q |
71 |
atacaaattaggcaaacacttacagcaggaaatacaaattccatcttggcactgatccaaagaaatccaacgaacagaacaagagaaaacaaacctnnnn |
170 |
Q |
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|||||||| | |||||||||||||| | || ||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||| |||||| |
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| T |
26777576 |
atacaaatcatgcaaacacttacagtaagagatacaaattccatcttggcactgatccaaagaagtccaaccaacagaacaagcgaaagtaaaccttaaa |
26777675 |
T |
|
| Q |
171 |
nnnnttgcaaataaagtcaaatctccatcataaggaacaagnnnnnnncaaatacaaattaacaaagacagtaaccaaccattgcatggataatgaagac |
270 |
Q |
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| ||||| | | ||||||| |||||| |||| || || | |||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26777676 |
aaa--tacaaatcatattaaatctctatcatacggaagaa-caaaaaacagaaacaaattaacaaagacagtaaccaaccattgcatcgataatgaagac |
26777772 |
T |
|
| Q |
271 |
gagtagaatcagagagaacaacaccaggaacaagttttccagggagaatggatccaacaatggc |
334 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26777773 |
gagtagaatcagagagaacaacaccaggaacaagctttccagggagaatggatccaacaatggc |
26777836 |
T |
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