View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0571_high_22 (Length: 310)
Name: NF0571_high_22
Description: NF0571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0571_high_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 49923446 - 49923238
Alignment:
| Q |
17 |
aaagaaatccaacgaacagaacaagagaaaacaaacctnnnnnnnntt-gcaaataaagtcaaatctccatcataaggaacaagnnnnnnn-caaataca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
49923446 |
aaagaaatccaacgaacagaacaagagaaaacaaacctaatttttttttgctaataaagtcaaatctccatcataaggaacaagaaaaaaaacaaataca |
49923347 |
T |
|
| Q |
115 |
aattaacaaagacagtaaccaaccattgcatggataatgaagacgagtagaatcagagagaacaacaccaggaacaagttttccagggagaatggatcca |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49923346 |
aattaacaaagacagtaaccaaccattgcatcgataatgaagacgagtagaatcagagagaacaacaccaggaacaagttttccagggagaatggatcca |
49923247 |
T |
|
| Q |
215 |
acaatggcc |
223 |
Q |
| |
|
||||||||| |
|
|
| T |
49923246 |
acaatggcc |
49923238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 112 - 222
Target Start/End: Original strand, 26777726 - 26777836
Alignment:
| Q |
112 |
acaaattaacaaagacagtaaccaaccattgcatggataatgaagacgagtagaatcagagagaacaacaccaggaacaagttttccagggagaatggat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26777726 |
acaaattaacaaagacagtaaccaaccattgcatcgataatgaagacgagtagaatcagagagaacaacaccaggaacaagctttccagggagaatggat |
26777825 |
T |
|
| Q |
212 |
ccaacaatggc |
222 |
Q |
| |
|
||||||||||| |
|
|
| T |
26777826 |
ccaacaatggc |
26777836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 15170 times since January 2019
Visitors: 1163