View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0571_low_1 (Length: 845)
Name: NF0571_low_1
Description: NF0571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0571_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 607; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 105 - 749
Target Start/End: Complemental strand, 48542300 - 48541659
Alignment:
| Q |
105 |
ttttgatatcttatccgaattgttatgactaactcttattgtttggttcatgtaggttttccattgttttggtcaatatttttgtctccattttgaagca |
204 |
Q |
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| T |
48542300 |
ttttgatatcttatccaaattgttatgactaactcttattgtttggttcatgtaggttttccattgttttggtcaatatttttgtctccattttgaagca |
48542201 |
T |
|
| Q |
205 |
ttccagcttgaaacgtcacctgtttacatggcatttcttcgattcatgggtgatgatagagacgccaagaactacagctacagcttagaagtgggaggaa |
304 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48542200 |
ttccagcttgaaacgtcacctgtttacatggcgtttcttcgattcatgggtgatgacagagacgccaagaactacagctacagcttagaagtgggaggaa |
48542101 |
T |
|
| Q |
305 |
atggacgtaaactaacatttgaagggagtccaagaagcattagagatagtcacaagaaagtgaaggatagtcatgacggcctaatcatataccgtaacat |
404 |
Q |
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| T |
48542100 |
atggacgtaaactaacatttgaagggagtccaagaagcattagagatagtcacaagaaagtgaaggatagtcatgacggcctaatcatataccgtaacat |
48542001 |
T |
|
| Q |
405 |
ggcacttttcttctcaggtggggatagaaaagagttgaaactaagagtaacaggaaggatatggaaagagcagcaaaactctgaatgcacacccaacatg |
504 |
Q |
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| T |
48542000 |
ggcacttttcttctcaggtggggatagaaaagagttgaaactaagagtaacaggaaggatatggaaagagcagcaaaactctgaatgcacacccaacatg |
48541901 |
T |
|
| Q |
505 |
tgtagctaggttgtgctatttcttattgtagattactagattttggaaagtcttatctagttatcttggtgtatgttttgttaatggttatggaggtttc |
604 |
Q |
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| T |
48541900 |
tgtagctaggttgtgctatttcttattgtagattactagattttggaaagtcttatctagttatcttggtgtatgttttgttaatggttatggaggtttc |
48541801 |
T |
|
| Q |
605 |
aatttacaaaacacactacttcccttctcatgccacttttcatttcttgttcataacaagtaatacaagcaagaatctttacttctacagctacttgcat |
704 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
48541800 |
aatttacaaaacac---acttcccttctcatgccacttttcatttcgtgttcataacaagtaatacaagcaagaatctttacttctacagctactttgat |
48541704 |
T |
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| Q |
705 |
cttcctaggatctttttagctatttgtaagaaatggaaacatgct |
749 |
Q |
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| T |
48541703 |
cttcctaggatctttttagctatttgtaagaaatggaaacatgct |
48541659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 48542599 - 48542488
Alignment:
| Q |
1 |
cggaagtagaaaatgctacttggatgctaacggtaattatgactcttaacaaaatttgctatttattgatcggtttagttatttagcaactgatgaattc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48542599 |
cggaagtagaaaatgctacttggatgctaacggtaattatgacccttaacaaaatttgctatttattgatcggtttagttatttagcaactgatgaattc |
48542500 |
T |
|
| Q |
101 |
agatttttgata |
112 |
Q |
| |
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|||||||||||| |
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| T |
48542499 |
agatttttgata |
48542488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 117; Significance: 4e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 157 - 489
Target Start/End: Original strand, 9837124 - 9837456
Alignment:
| Q |
157 |
taggttttccattgttttggtcaatatttttgtctccattttgaagcattccagcttgaaacgtcacctgtttacatggcatttcttcgattcatgggtg |
256 |
Q |
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||||| ||||| |||||||| |||||||| ||||||||||||||||| || || |||| || | | || ||||||||||||||||| || |||||||| | |
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| T |
9837124 |
taggtcttccactgttttggacaatatttctgtctccattttgaagcctttcaacttggaatggctccagtttacatggcatttctccgtttcatgggag |
9837223 |
T |
|
| Q |
257 |
atgatagagacgccaagaactacagctacagcttagaagtgggaggaaatggacgtaaactaacatttgaagggagtccaagaagcattagagatagtca |
356 |
Q |
| |
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|||| ||||| |||| || |||||||||||| | || || ||||| | ||||| ||||||| | || || |||||||| ||||||||||| || || |
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| T |
9837224 |
atgaaagagatgccaggagctacagctacagtcttgaggtaggagggagcggacgcaaactaatctacgagggcagtccaaggagcattagagacagcca |
9837323 |
T |
|
| Q |
357 |
caagaaagtgaaggatagtcatgacggcctaatcatataccgtaacatggcacttttcttctcaggtggggatagaaaagagttgaaactaagagtaaca |
456 |
Q |
| |
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||||||||| | || |||||||| ||||| || |||||||| |||||||||||||||||||| ||||| ||||| |||||| |||| || |||||||| |
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| T |
9837324 |
caagaaagttagagacagtcatgatggcctcattatataccggaacatggcacttttcttctctggtggagataggaaagagctgaagttacgagtaaca |
9837423 |
T |
|
| Q |
457 |
ggaaggatatggaaagagcagcaaaactctgaa |
489 |
Q |
| |
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||||||||||||||||| ||||||||| ||||| |
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| T |
9837424 |
ggaaggatatggaaagaacagcaaaaccctgaa |
9837456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 403 - 470
Target Start/End: Complemental strand, 41632858 - 41632791
Alignment:
| Q |
403 |
atggcacttttcttctcaggtggggatagaaaagagttgaaactaagagtaacaggaaggatatggaa |
470 |
Q |
| |
|
|||||||| || ||||| ||||||||||| || ||||||||||| ||||| || ||||| |||||||| |
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| T |
41632858 |
atggcactatttttctctggtggggataggaaggagttgaaacttagagtcaccggaagaatatggaa |
41632791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 254
Target Start/End: Complemental strand, 41633105 - 41633007
Alignment:
| Q |
156 |
gtaggttttccattgttttggtcaatatttttgtctccattttgaagcattccagcttgaaacgtcacctgtttacatggcatttcttcgattcatggg |
254 |
Q |
| |
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|||||| || ||||||||||| |||||||| || || ||||| ||||| || ||||||| | | | ||||||||||||||||| ||||| || ||||| |
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| T |
41633105 |
gtaggtatttcattgttttggccaatatttctgccttcatttcgaagcttttcagcttggcatggcccctgtttacatggcattccttcggtttatggg |
41633007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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