View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0571_low_10 (Length: 600)
Name: NF0571_low_10
Description: NF0571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0571_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 493; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 29 - 525
Target Start/End: Original strand, 8797828 - 8798324
Alignment:
| Q |
29 |
accaccatcatggtccggccgtctatggggacgaacactctgctcccaagaccccactggaaaattctcatgcatcaccggcgactgtgattcctccacc |
128 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8797828 |
accaccatcatggtccggccgtgtatggggacgaacactctgctcccaagaccccactggaaaattctcatgcatcaccggcgactgtgattcctccacc |
8797927 |
T |
|
| Q |
129 |
atcgaatgtgccggaagaaacgctataccaccggcaacattagcagaattcacactcaacggttccggaggacttgatttcttcgacgttagtctcgtcg |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8797928 |
atcgaatgtgccggaagaaacgctataccaccggcaacattagcagaattcacactcaacggttccggaggacttgatttcttcgacgttagtctcgtcg |
8798027 |
T |
|
| Q |
229 |
acggttacaatctcccaatattaatcgaaccacacggtgaaaccggcggcggaaactgcacggcaacgggttgctccgtcgacttaaacgcggcgtgtcc |
328 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8798028 |
acggttacaatctcccaatattaatcgaaccacacggtgaaaccggcggcggaaactgcacggcaacgggttgctccgtcgacttaaacgcggcgtgtcc |
8798127 |
T |
|
| Q |
329 |
gatggagttgaaagtgataagtagtaataacggcggtgaagagagcgtggcgtgtaaaagcgcgtgtgaagcgtttggggatccgcaatattgctgcagt |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8798128 |
gatggagttgaaagtgataagtagtaataacggcggtgaagagagcgtggcgtgtaaaagcgcgtgtgaagcgtttggggatccgcaatattgctgcagt |
8798227 |
T |
|
| Q |
429 |
ggcgcttatggttccccggatacgtgtaaaccaagttcctactcgcagttttttaagagtgcgtgtccacgcgcttatagttacgcttatgatgatg |
525 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8798228 |
ggcgcttatggttccccggatacgtgtaaaccaagttcctactcgcagttttttaagagtgcgtgtccacgcgcttatagttacgcttatgatgatg |
8798324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 527 - 561
Target Start/End: Original strand, 8798361 - 8798395
Alignment:
| Q |
527 |
ccatcactttttgccccacaccctccgcaaggtaa |
561 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
8798361 |
ccatcactttttgccccacaccctccgcaaggtaa |
8798395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 133; Significance: 7e-69; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 39 - 525
Target Start/End: Complemental strand, 14039780 - 14039306
Alignment:
| Q |
39 |
tggtccggccgtctatggggacgaacactctgctcccaagaccccactggaaaattctcatgcatcaccggcgactgtgattcctccaccatcgaatgtg |
138 |
Q |
| |
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||||| ||||||||||||||||| || |||||||| ||||| |||| |||||||||||||| | ||||| ||||||| |||||| |||| |||||| |
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| T |
14039780 |
tggtcaggccgtctatggggacgtaccctctgctctcaagattccaccggaaaattctcatgtgttaccggtgactgtgcttcctcgtccatagaatgta |
14039681 |
T |
|
| Q |
139 |
ccggaagaaacgctataccaccggcaacattagcagaattcacactcaacggttccggaggacttgatttcttcgacgttagtctcgtcgacggttacaa |
238 |
Q |
| |
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||| |||||||| ||| || || |||||||| || || ||||| |||||| | ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
14039680 |
atggaggaaacgctcaaccgccagctacattagccgagtttacacttaacggtgcaaacggacttgatttcttcgacgttagtctcgtggacggttacaa |
14039581 |
T |
|
| Q |
239 |
tctcccaatattaatcgaaccacacggtgaaaccggcggcggaaactgcacggcaacgggttgctccgtcgacttaaacgcggcgtgtccgatggagttg |
338 |
Q |
| |
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|||||||| | ||||||||||| || | |||||| ||||||||||||| | |||| |||||| || || || |||||||| ||||| | |||||| |
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| T |
14039580 |
cctcccaatgatgatcgaaccacaaggagcaaccggaggcggaaactgcatgacaacaggttgcatggtggatttgaacgcggcatgtccaaccgagttg |
14039481 |
T |
|
| Q |
339 |
aaagtgataagtagtaataacggcggtgaagagagcgtggcgtgtaaaagcgcgtgtgaagcgtttggggatccgcaatattgctgcagtggcgcttatg |
438 |
Q |
| |
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|||||||| || ||| ||||| | | || ||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| | |
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| T |
14039480 |
aaagtgatgag------taatggcggag------gtgtagcgtgtaaaagcgcgtgtgaagcgtttggggatccacaatattgttgtagtggcgcttacg |
14039393 |
T |
|
| Q |
439 |
gttccccggatacgtgtaaaccaagttcctactcgcagttttttaagagtgcgtgtccacgcgcttatagttacgcttatgatgatg |
525 |
Q |
| |
|
||| || |||| || || |||||||| ||||| |||||||| |||||||| ||||| ||||||||||| |||||||||||||||| |
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| T |
14039392 |
cttctccaaatacatgcaagccaagttcatactcacagtttttcaagagtgcttgtcctcgcgcttatagctacgcttatgatgatg |
14039306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 39 - 525
Target Start/End: Complemental strand, 18954751 - 18954277
Alignment:
| Q |
39 |
tggtccggccgtctatggggacgaacactctgctcccaagaccccactggaaaattctcatgcatcaccggcgactgtgattcctccaccatcgaatgtg |
138 |
Q |
| |
|
|||||||||||||||||||| ||||| || ||||| ||||| |||| |||||||||||||| | || |||||||||| |||||||||||| ||||||| |
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| T |
18954751 |
tggtccggccgtctatggggccgaaccctatgctctcaagattccaccggaaaattctcatgtgttactggcgactgtgcttcctccaccatagaatgtg |
18954652 |
T |
|
| Q |
139 |
ccggaagaaacgctataccaccggcaacattagcagaattcacactcaacggttccggaggacttgatttcttcgacgttagtctcgtcgacggttacaa |
238 |
Q |
| |
|
||| |||||||| ||| || |||||||||||||| || ||||| ||||| | || ||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
18954651 |
ttggaggaaacgctcaaccgccagcaacattagcagagtttacacttaacggcgcaggtggacttgatttcttcgacgttagtctcgttgacggttacaa |
18954552 |
T |
|
| Q |
239 |
tctcccaatattaatcgaaccacacggtgaaaccggcggcggaaactgcacggcaacgggttgctccgtcgacttaaacgcggcgtgtccgatggagttg |
338 |
Q |
| |
|
||||| | || ||| |||||| || | |||||| || |||||||||| | |||| |||||| || || || ||| |||||||||| | |||||| |
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| T |
18954551 |
cctcccgttgttgatcaaaccacgtggagcaaccgggggtggaaactgcatgacaacaggttgcatggtggatttgaacacggcgtgtccaaccgagttg |
18954452 |
T |
|
| Q |
339 |
aaagtgataagtagtaataacggcggtgaagagagcgtggcgtgtaaaagcgcgtgtgaagcgtttggggatccgcaatattgctgcagtggcgcttatg |
438 |
Q |
| |
|
|||||||| || ||||| |||| || || ||||||||||||||||||||||||||||| |||| ||||||||| || | ||||||||| | |
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| T |
18954451 |
aaagtgatgag------taacg-----gaag-cagtgtagcgtgtaaaagcgcgtgtgaagcgtttggagatctgcaatattgttgtaatggcgcttacg |
18954364 |
T |
|
| Q |
439 |
gttccccggatacgtgtaaaccaagttcctactcgcagttttttaagagtgcgtgtccacgcgcttatagttacgcttatgatgatg |
525 |
Q |
| |
|
| | || ||||| || || |||||||| ||||| || || ||||||||||| |||||||| ||||||||||| ||||||||||||| |
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|
| T |
18954363 |
ctactccagatacatgcaagccaagttcgtactcacaattctttaagagtgcatgtccacgtgcttatagttatgcttatgatgatg |
18954277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 365 - 525
Target Start/End: Complemental strand, 31945179 - 31945019
Alignment:
| Q |
365 |
tgaagagagcgtggcgtgtaaaagcgcgtgtgaagcgtttggggatccgcaatattgctgcagtggcgcttatggttccccggatacgtgtaaaccaagt |
464 |
Q |
| |
|
|||| |||||||||| |||||||||||||| ||||| ||||| ||||| ||||| |||| |||||||||||| | ||| | || ||||| |||||| |
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|
| T |
31945179 |
tgaaaagagcgtggcatgtaaaagcgcgtgcgaagcctttggtgatccattgtattgttgcaatggcgcttatggaactccgcagacttgtaagccaagt |
31945080 |
T |
|
| Q |
465 |
tcctactcgcagttttttaagagtgcgtgtccacgcgcttatagttacgcttatgatgatg |
525 |
Q |
| |
|
|| ||||||||||| || ||||| |||||||||||||||||||| || ||||||||||||| |
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|
| T |
31945079 |
tcatactcgcagttcttcaagagcgcgtgtccacgcgcttatagctatgcttatgatgatg |
31945019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 31945513 - 31945432
Alignment:
| Q |
34 |
catcatggtccggccgtctatggggacgaacactctgctcccaagaccccactggaaaattctcatgcatcaccggcgactg |
115 |
Q |
| |
|
|||| ||||||||||| ||||||| |||||||| ||||| |||||| | |||||||||||||||||||| || ||||| |
|
|
| T |
31945513 |
catcttggtccggccgcatatggggccgaacactatgctcaaccgacccctccggaaaattctcatgcatcactggagactg |
31945432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 239
Target Start/End: Original strand, 8119036 - 8119120
Alignment:
| Q |
155 |
accaccggcaacattagcagaattcacactcaacggttccggaggacttgatttcttcgacgttagtctcgtcgacggttacaat |
239 |
Q |
| |
|
|||||||||||| ||||| ||||||||| | |||| || || || ||||| |||||||| |||||||| || |||||||||||| |
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|
| T |
8119036 |
accaccggcaactttagccgaattcacattagacggctctggtggtcttgacttcttcgatgttagtcttgttgacggttacaat |
8119120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 27975685 - 27975648
Alignment:
| Q |
204 |
gatttcttcgacgttagtctcgtcgacggttacaatct |
241 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||| |
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|
| T |
27975685 |
gatttctacgacgtgagtctcgtcgacggttacaatct |
27975648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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