View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0571_low_12 (Length: 560)
Name: NF0571_low_12
Description: NF0571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0571_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 93 - 534
Target Start/End: Original strand, 2310608 - 2311059
Alignment:
| Q |
93 |
ctattaaggcagcaggcaaggccgttcaagctaaccttggttagagctcttttgacttttctcatttctctcttttcaattacttgcgatcaatgtttat |
192 |
Q |
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| T |
2310608 |
ctattaagacagcacagaaggccgttaaatctgcccttggttagagctattttgacttttctcatttctctcttttcaattacttgcgatcaatgtttat |
2310707 |
T |
|
| Q |
193 |
ttatttgaaaatttaaaccaccaagaagtagctttgcatatacgtttttgcatatctgtaattggcaggcgaacatagaatagaagttttataaatttta |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||| |
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| T |
2310708 |
ttatttgaaaatttaaaccaccaagaagtagctttgcatatacgtttttgcatatctgtaattgccagggggacatagaatagaagttttataaatttta |
2310807 |
T |
|
| Q |
293 |
tcttacttttgcagttggcgaggatgaagagaagctgtgatctgaagctgtttgc----------ttgcatttcatattttatcatttttggaattctgt |
382 |
Q |
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|||||||||||||| || |||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||| |
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| T |
2310808 |
tcttacttttgcagatgaggagggtgaagagaagctgtgatctgaagctggttgctactaccatgttgcatttcatattttatcatttttgaaattctgt |
2310907 |
T |
|
| Q |
383 |
tttattaattttgaatttaactacctagcagatgccccacatatgttggggaataaaaaacaccttgatgttgtgtgaccatctatttgaatctgtttgc |
482 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2310908 |
tttattaa-tttgaatttaactacctagcagatgccccacatttgttggggaataaaaaacaccttgatgttgtgtgaccatctatttgaatctatttgc |
2311006 |
T |
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| Q |
483 |
ttaataatttgatttac-tttttcggttcaacaatatctatctacagtattat |
534 |
Q |
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|| |||||||||||||| ||||||||||||||||||| | ||||||||||||| |
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| T |
2311007 |
ttgataatttgatttacttttttcggttcaacaatatttgtctacagtattat |
2311059 |
T |
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