View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0571_low_13 (Length: 531)
Name: NF0571_low_13
Description: NF0571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0571_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 11 - 393
Target Start/End: Complemental strand, 8912933 - 8912551
Alignment:
| Q |
11 |
acaatatctactacggcacagcagcaagtgcagcaaactacggcggctacggcggtaactccaataagaaagactcagcagaatacatttacgacgttcc |
110 |
Q |
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| T |
8912933 |
acaatatctactacggcacagcagcaagtgcagcaaactacggcggctacggcggtaactccaacaagaaagactcagcagaatacatctacgacgttcc |
8912834 |
T |
|
| Q |
111 |
agaaggatggaaggaacgtttaatatcaaaagttgaaaaaggtacaaatggaacagacagtgaattctacaatccaaagaagagaacagagaaagaatat |
210 |
Q |
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|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8912833 |
agaaggttggaaggaacgtttaatatcaaaagtagaaaaaggtacaaatggaacagacagtgaattctacaatccaaagaagagaacagagaaagaatat |
8912734 |
T |
|
| Q |
211 |
ctaactttcctttctgggtttcgtcagttagcaccaaaagatgctgttttgaacaacttagcactttctgatgtgaatttgcaagatataatcagtggtg |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
8912733 |
ctaactttcctttctgggtttcgtcagttagcaccaaaagatgctgttttgaacaacttagcactttctgatgtgaatttgcaagatattattagtggtg |
8912634 |
T |
|
| Q |
311 |
ctgataatgtgagttctgaagaagtgaaagatgaaaatggtcaagtttattatgtttatgagattgatggtgttgcttatcat |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8912633 |
ctgataatgtgagttctgaagaagtgaaagatgaaaatggtcaagtttattatgtttatgagattgatggtgttgcttatcat |
8912551 |
T |
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