View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0571_low_14 (Length: 516)
Name: NF0571_low_14
Description: NF0571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0571_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 463; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 30 - 504
Target Start/End: Original strand, 39235654 - 39236128
Alignment:
| Q |
30 |
gaatcatacaaaatgcacgaataattttatagttaagctgtgagattcttagcactatggttctcaattcttattcatatcagccaaaacaaaatgaaag |
129 |
Q |
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| T |
39235654 |
gaatcatacaaaatgcacgaataattttatagttaagctgtgagattcttagcactatggttctcaattcttattcatatcagccaaaacaaaatgaaag |
39235753 |
T |
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| Q |
130 |
tttggacaataactgttaaaatctaattgtcaaattatatcacacattgagctaaaaaattgcacttctattacataatgatattgtatccttgtttgta |
229 |
Q |
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| T |
39235754 |
tttggacaataactgttaaaatctaattgtcaaattatatcacacattgagctaaaaaattgcacttctattacataatgatattgtatccttgtatgta |
39235853 |
T |
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| Q |
230 |
cattttgtacaggagttataaaagcaaataattcttacacatgaacatctaattcaaaagttaaaaataaaagaagaaaagttagtagaagaagttatta |
329 |
Q |
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| T |
39235854 |
cattttgtacaggagttataaaagcaaataattcttacacatgaacatctaattcaaaagttaaaaataaaagaagaaaagttagtagaagaagtaatta |
39235953 |
T |
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| Q |
330 |
ttttgttgtcacaccaagtattaggaaccaacaaaatataatcacaatcacaacctttctgtattaaaaacagattgatgcccccttggtggtgtaacag |
429 |
Q |
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| T |
39235954 |
tttttttgtcacaccaagtattaggaaccaacaaaatataatcacaatcacaacctttctgtattaaaaacagattgatgcccccttggtggtgtaacag |
39236053 |
T |
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| Q |
430 |
aatgatgactaacataatcttcatttgttaacactggtgttcccaatccatcttcagtaccagctccaacatatt |
504 |
Q |
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| T |
39236054 |
aatgatgactaacataatcttcatttgttaacactggtgttcccaatccatcttcagtaccagctccaacatatt |
39236128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 39235447 - 39235504
Alignment:
| Q |
145 |
ttaaaatctaattgtcaaattatatcacacattgagctaaaaaattgcacttctatta |
202 |
Q |
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| T |
39235447 |
ttaaaatctaattgtcaaattatatcacacgttgagctaagaaattgcacttctatta |
39235504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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