View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0571_low_25 (Length: 336)
Name: NF0571_low_25
Description: NF0571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0571_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 322
Target Start/End: Original strand, 2311071 - 2311383
Alignment:
| Q |
20 |
acatcatcacttcacataattctacttttgacatgtcacaattttatgctccctacagcctcaagtatacaatacacagtagtgcacacactata--tag |
117 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2311071 |
acatgatcacttcacataattctacttttgacatgtcacaattttatgcttcctacagcctcaagtatacaatacacagtagtgcacacactatagatag |
2311170 |
T |
|
| Q |
118 |
acaaaaacctttaactgg--------agattgaagctcataattgtgtatattttatttataatctttccttctctatcttccttatgctatataagccc |
209 |
Q |
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||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
2311171 |
acacaaacctttaactggttacacaaagattgaagctcataattgtgtatatttgatttataatcatcccttctctatcttccttatgctatataagccc |
2311270 |
T |
|
| Q |
210 |
cacccccatcctctcttatcaattgaatcgtgactacaattccttcaacttctattataacacatagaattccttcaatttctactatgccactattgaa |
309 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
2311271 |
cacgcccatcctctcttatcaattgaatcgtgactacaattccttcaacttctattatatcacatagaattccttcaatttatactatgccactattgag |
2311370 |
T |
|
| Q |
310 |
accctctttgtcc |
322 |
Q |
| |
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|||||||||||| |
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|
| T |
2311371 |
gccctctttgtcc |
2311383 |
T |
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