View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0571_low_29 (Length: 270)
Name: NF0571_low_29
Description: NF0571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0571_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 224
Target Start/End: Complemental strand, 49923446 - 49923238
Alignment:
| Q |
17 |
aaagaaatccaacgaacagaacaagagaaaacaaacctnnnnnnnnnttgcaaataaagtcaaatctccatcataaggaacaagnnnnnnn-caaataca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
49923446 |
aaagaaatccaacgaacagaacaagagaaaacaaacctaatttttttttgctaataaagtcaaatctccatcataaggaacaagaaaaaaaacaaataca |
49923347 |
T |
|
| Q |
116 |
aattaacaaagacagtaaccaaccattgcatggataatgaagacgagtagaatcagagagaacaacaccaggaacaagttttccagggagaatggatcca |
215 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49923346 |
aattaacaaagacagtaaccaaccattgcatcgataatgaagacgagtagaatcagagagaacaacaccaggaacaagttttccagggagaatggatcca |
49923247 |
T |
|
| Q |
216 |
acaatggcc |
224 |
Q |
| |
|
||||||||| |
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| T |
49923246 |
acaatggcc |
49923238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 113 - 223
Target Start/End: Original strand, 26777726 - 26777836
Alignment:
| Q |
113 |
acaaattaacaaagacagtaaccaaccattgcatggataatgaagacgagtagaatcagagagaacaacaccaggaacaagttttccagggagaatggat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
26777726 |
acaaattaacaaagacagtaaccaaccattgcatcgataatgaagacgagtagaatcagagagaacaacaccaggaacaagctttccagggagaatggat |
26777825 |
T |
|
| Q |
213 |
ccaacaatggc |
223 |
Q |
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||||||||||| |
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|
| T |
26777826 |
ccaacaatggc |
26777836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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