View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0571_low_33 (Length: 243)

Name: NF0571_low_33
Description: NF0571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0571_low_33
NF0571_low_33
[»] chr8 (10 HSPs)
chr8 (22-243)||(41721758-41721975)
chr8 (103-243)||(6911036-6911177)
chr8 (175-243)||(16324924-16324992)
chr8 (175-243)||(22781135-22781203)
chr8 (175-243)||(41403839-41403907)
chr8 (177-235)||(43801553-43801611)
chr8 (175-243)||(8489453-8489521)
chr8 (177-243)||(14999324-14999390)
chr8 (175-203)||(16325037-16325065)
chr8 (175-203)||(40621720-40621748)
[»] chr2 (10 HSPs)
chr2 (105-243)||(12232572-12232710)
chr2 (101-243)||(20296569-20296712)
chr2 (102-243)||(17200084-17200226)
chr2 (175-243)||(34645699-34645767)
chr2 (175-243)||(22563363-22563431)
chr2 (175-243)||(29892952-29893020)
chr2 (102-243)||(21265569-21265710)
chr2 (175-243)||(13979785-13979853)
chr2 (102-149)||(4371460-4371507)
chr2 (102-149)||(22563216-22563263)
[»] chr1 (20 HSPs)
chr1 (175-243)||(42082969-42083037)
chr1 (175-243)||(27171952-27172020)
chr1 (175-243)||(34970065-34970133)
chr1 (175-243)||(3385391-3385459)
chr1 (175-243)||(33156535-33156603)
chr1 (175-243)||(38338747-38338815)
chr1 (175-243)||(39781217-39781284)
chr1 (106-243)||(33400865-33401005)
chr1 (102-243)||(24882977-24883117)
chr1 (175-243)||(5771988-5772056)
chr1 (175-243)||(37948941-37949009)
chr1 (175-235)||(49776984-49777044)
chr1 (177-243)||(13947075-13947141)
chr1 (175-206)||(3385501-3385532)
chr1 (104-203)||(33156648-33156747)
chr1 (102-152)||(34622570-34622620)
chr1 (175-203)||(13947002-13947030)
chr1 (175-203)||(24883161-24883189)
chr1 (175-203)||(37948868-37948896)
chr1 (175-203)||(43297044-43297072)
[»] chr5 (11 HSPs)
chr5 (102-243)||(17370073-17370215)
chr5 (102-243)||(31194118-31194260)
chr5 (175-243)||(14076748-14076816)
chr5 (175-243)||(42546502-42546570)
chr5 (177-243)||(39634956-39635022)
chr5 (177-243)||(304093-304159)
chr5 (105-243)||(32347050-32347189)
chr5 (175-222)||(8754738-8754785)
chr5 (102-149)||(31193971-31194018)
chr5 (119-203)||(39634828-39634911)
chr5 (175-203)||(42546429-42546457)
[»] chr7 (18 HSPs)
chr7 (175-243)||(35207258-35207326)
chr7 (175-243)||(26903581-26903649)
chr7 (175-243)||(29474566-29474634)
chr7 (182-243)||(2834288-2834349)
chr7 (175-243)||(19318227-19318295)
chr7 (175-243)||(48006204-48006272)
chr7 (175-243)||(35363471-35363539)
chr7 (177-240)||(6408336-6408399)
chr7 (177-243)||(3740725-3740791)
chr7 (102-148)||(19318468-19318514)
chr7 (102-142)||(25048279-25048319)
chr7 (102-148)||(19318397-19318443)
chr7 (177-207)||(35363400-35363430)
chr7 (177-206)||(48006314-48006343)
chr7 (104-152)||(6408261-6408309)
chr7 (175-203)||(6408447-6408475)
chr7 (178-206)||(25048171-25048199)
chr7 (178-206)||(25048213-25048241)
[»] chr3 (17 HSPs)
chr3 (105-243)||(43797361-43797500)
chr3 (177-243)||(29828759-29828825)
chr3 (175-241)||(4041263-4041329)
chr3 (102-243)||(8799323-8799464)
chr3 (102-243)||(38499971-38500116)
chr3 (176-243)||(48346131-48346198)
chr3 (102-234)||(53197147-53197278)
chr3 (175-233)||(46883495-46883553)
chr3 (102-202)||(38499825-38499925)
chr3 (175-243)||(43797796-43797863)
chr3 (175-206)||(25349900-25349931)
chr3 (102-203)||(4041376-4041478)
chr3 (208-242)||(20383145-20383179)
chr3 (175-203)||(20383228-20383256)
chr3 (175-203)||(29828874-29828902)
chr3 (175-203)||(46883605-46883633)
chr3 (175-203)||(53197068-53197096)
[»] chr6 (8 HSPs)
chr6 (177-243)||(11014474-11014540)
chr6 (102-243)||(22748594-22748736)
chr6 (175-235)||(16125683-16125743)
chr6 (181-243)||(33277392-33277454)
chr6 (196-243)||(24565206-24565253)
chr6 (186-243)||(34851398-34851454)
chr6 (179-226)||(6705297-6705344)
chr6 (175-203)||(24565295-24565323)
[»] chr4 (17 HSPs)
chr4 (175-241)||(50544336-50544402)
chr4 (175-243)||(26297393-26297461)
chr4 (177-241)||(7062054-7062118)
chr4 (175-243)||(11790015-11790083)
chr4 (179-243)||(9551377-9551442)
chr4 (175-243)||(19037875-19037943)
chr4 (183-235)||(32591309-32591361)
chr4 (175-243)||(23655147-23655214)
chr4 (177-235)||(1025067-1025125)
chr4 (175-237)||(3556446-3556507)
chr4 (175-232)||(46993147-46993204)
chr4 (102-149)||(32591167-32591214)
chr4 (102-203)||(5465859-5465961)
chr4 (194-243)||(5466006-5466055)
chr4 (208-241)||(21785861-21785894)
chr4 (175-203)||(9551304-9551332)
chr4 (175-203)||(19037802-19037830)


Alignment Details
Target: chr8 (Bit Score: 149; Significance: 8e-79; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 22 - 243
Target Start/End: Original strand, 41721758 - 41721975
Alignment:
Q  22 catatcactttcatgcatactaaagcagattgtactgcaccaatgttgaagaataaacggcccccaacccgagttcgggtgggtatgctcgatttatgct 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    || |||||||||||||   |    
T  41721758 catatcactttcatgcatactaaagcagattgtactgcaccaatgttgaagaataaacggcccccaacctgagttc----ggatatgctcgatttagatt 41721853  T
Q  122 aagctccatttacttcatttaaggtttgaatttttgacatgtggcnnnnnnnntctaacggttgagattttaaattaaaaaataagaaaaggttgttgtg 221  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||        ||||||||||||||||||||||||||||||||||||| |||||||||    
T  41721854 aagctccatttacttcatttaagatttggatttttgacatgtggcaaaaaaaatctaacggttgagattttaaattaaaaaataagaaaatgttgttgtg 41721953  T
Q  222 atatgagagaagaagggaacat 243  Q
    ||||||||||||||||||||||    
T  41721954 atatgagagaagaagggaacat 41721975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 103 - 243
Target Start/End: Original strand, 6911036 - 6911177
Alignment:
Q  103 ggtatgctcgatttatgctaagctccatttacttcatttaaggtttgaatttttgacatgtggcnnnnnnnn-tctaacggttgagattttaaattaaaa 201  Q
    ||||||||| ||||| ||||||||||||||||| |||||| |||||| || |  ||||||||||         ||||||| |||||||||||||||||||    
T  6911036 ggtatgctccatttaggctaagctccatttactccatttagggtttggatgtaagacatgtggcaaaaaaatatctaacgattgagattttaaattaaaa 6911135  T
Q  202 aataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    || || |||||||||||| |||||||||||||||||||||||    
T  6911136 aacaataaaaggttgttgcgatatgagagaagaagggaacat 6911177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 16324924 - 16324992
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    ||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||    
T  16324924 tctaacggttgagattttaaattaaaaaacaataaaaggttgttgcgatatgagagaagaagggaacat 16324992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 22781135 - 22781203
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    |||||| |||||||||||||||||||||| || |||||||||||| ||||||| |||||||||||||||    
T  22781135 tctaacagttgagattttaaattaaaaaacaacaaaaggttgttgcgatatgaaagaagaagggaacat 22781203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 41403839 - 41403907
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    |||||| |||||||||||||||||||||| || |||||||||||| ||||||||||||||||| |||||    
T  41403839 tctaacagttgagattttaaattaaaaaacaataaaaggttgttgcgatatgagagaagaaggaaacat 41403907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 43801553 - 43801611
Alignment:
Q  177 taacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaa 235  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||    
T  43801553 taacggttgagattttaaattaaaaaataataaaaggttgttgggatatgaaagaagaa 43801611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 8489453 - 8489521
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    ||||||| ||||||||||||||||||||| || |||||||||||  |||||| || |||||||||||||    
T  8489453 tctaacgattgagattttaaattaaaaaacaataaaaggttgttccgatatgggaaaagaagggaacat 8489521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 243
Target Start/End: Complemental strand, 14999390 - 14999324
Alignment:
Q  177 taacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    |||| ||| |||||||||||||||||  || ||||| ||||||  ||||||||||||||||||||||    
T  14999390 taacagttaagattttaaattaaaaagcaataaaagattgttgcaatatgagagaagaagggaacat 14999324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 16325065 - 16325037
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaa 203  Q
    |||||||||||||||||||||||||||||    
T  16325065 tctaacggttgagattttaaattaaaaaa 16325037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 40621748 - 40621720
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaa 203  Q
    |||||||||||||||||||||||||||||    
T  40621748 tctaacggttgagattttaaattaaaaaa 40621720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 105 - 243
Target Start/End: Original strand, 12232572 - 12232710
Alignment:
Q  105 tatgctcgatttatgctaagctccatttacttcatttaaggtttgaatttttgacatgtggcnnnnnnnntctaacggttgagattttaaattaaaaaat 204  Q
    ||||||| ||||| |||||||||||||||||  ||||| |||||| || |  ||||||||||        |||||||||||||||||||||||||||||     
T  12232572 tatgctccatttaggctaagctccatttactctatttagggtttggatgtaagacatgtggcaaaaaatatctaacggttgagattttaaattaaaaaac 12232671  T
Q  205 aagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    || |||||||||||| || ||||||||||||||||||||    
T  12232672 aataaaaggttgttgcgacatgagagaagaagggaacat 12232710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 101 - 243
Target Start/End: Complemental strand, 20296712 - 20296569
Alignment:
Q  101 tgggtatgctcgatttatgctaagctccatttacttcatttaaggtttgaatttttgacatgtggcnnnnnnnn-tctaacggttgagattttaaattaa 199  Q
    ||||||||||| ||||| ||||||||||||||||| ||||||||  ||| || |  ||||||||||         || ||||||||||||||||||||||    
T  20296712 tgggtatgctctatttaggctaagctccatttactccatttaagaattggatgtaagacatgtggcaaaaaaatatccaacggttgagattttaaattaa 20296613  T
Q  200 aaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    |||| || ||||||||||||| ||||||||||||||||||||||    
T  20296612 aaaacaataaaaggttgttgtcatatgagagaagaagggaacat 20296569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 102 - 243
Target Start/End: Original strand, 17200084 - 17200226
Alignment:
Q  102 gggtatgctcgatttatgctaagctccatttacttcatttaaggtttgaatttttgacatgtggcnnnnnnnn-tctaacggttgagattttaaattaaa 200  Q
    |||||||||| ||||| || |||||||||||||| |||||| | |||| || |  ||||||||||         ||||| ||||||||||||||||||||    
T  17200084 gggtatgctccatttaggcaaagctccatttactccatttaggatttggatgtaagacatgtggcaaataaatatctaatggttgagattttaaattaaa 17200183  T
Q  201 aaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    ||| || ||||||||||||||||||||||||||||||||||||    
T  17200184 aaacaataaaaggttgttgtgatatgagagaagaagggaacat 17200226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 34645767 - 34645699
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    ||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||    
T  34645767 tctaacggttgagattttaaattaaaaaacaataaaaggttgttgcgatatgagagaagaagggaacat 34645699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 22563431 - 22563363
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    ||||||||||||||||||||||||||||| || |||||||||||| ||| |||||||||||||||||||    
T  22563431 tctaacggttgagattttaaattaaaaaacaataaaaggttgttgcgatgtgagagaagaagggaacat 22563363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 29893020 - 29892952
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    ||||||||||||||||||||||||||||| || ||||| |||||| |||||||||||||||||||||||    
T  29893020 tctaacggttgagattttaaattaaaaaacaataaaagattgttgcgatatgagagaagaagggaacat 29892952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 243
Target Start/End: Original strand, 21265569 - 21265710
Alignment:
Q  102 gggtatgctcgatttatgctaagctccatttacttcatttaaggtttgaatttttgacatgtggcnnnnnnnntctaacggttgagattttaaattaaaa 201  Q
    |||||||||| |||||  |||||||| ||||||| |||||| |||||| ||    ||||||||||        |||||||||||||||||||||||||||    
T  21265569 gggtatgctccatttagactaagctcaatttactccatttagggtttggatgcaagacatgtggcaaaaaatatctaacggttgagattttaaattaaaa 21265668  T
Q  202 aataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    || || |||| ||| ||| |||||||||||||||| ||||||    
T  21265669 aacaataaaacgttattgcgatatgagagaagaagagaacat 21265710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 13979853 - 13979785
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    ||||||| ||||||||||||||||||||| ||  ||| ||||||| |||| ||||||||||| ||||||    
T  13979853 tctaacgattgagattttaaattaaaaaacaatgaaatgttgttgcgataggagagaagaagagaacat 13979785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 4371460 - 4371507
Alignment:
Q  102 gggtatgctcgatttatgctaagctccatttacttcatttaaggtttg 149  Q
    |||||||||| ||||| ||||||||||||||||| |||||| ||||||    
T  4371460 gggtatgctccatttaggctaagctccatttactccatttagggtttg 4371507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 22563216 - 22563263
Alignment:
Q  102 gggtatgctcgatttatgctaagctccatttacttcatttaaggtttg 149  Q
    |||||||||| ||||| ||||||||||||||||| |||||| ||||||    
T  22563216 gggtatgctccatttaggctaagctccatttactccatttagggtttg 22563263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 42083037 - 42082969
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  42083037 tctaacggttgagattttaaattataaaataataaaaggttgttgtgatatgagagaagaagggaacat 42082969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 27172020 - 27171952
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    |||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||    
T  27172020 tctaacggttgagattttcaattaaaaaacaataaaaggttgttgtgatatgagagaagaagggaacat 27171952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 34970065 - 34970133
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    ||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||    
T  34970065 tctaacggttgagattttaaattaaaaaacaataaaaggttgttgcgatatgagagaagaagggaacat 34970133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 3385391 - 3385459
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    |||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||    
T  3385391 tctaacggttaagattttaaattaaaaaataataaaaggttgttgcgatatgagagaagaagagaacat 3385459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 33156535 - 33156603
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    ||||||| ||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||    
T  33156535 tctaacgattgagattttaaattaaaaaacaataaaaagttgttgtgatatgagagaagaagggaacat 33156603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 38338747 - 38338815
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    ||||||||||||||||||||||||||||| || |||||||||||| ||||| |||||| ||||||||||    
T  38338747 tctaacggttgagattttaaattaaaaaacaataaaaggttgttgcgatataagagaataagggaacat 38338815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 39781284 - 39781217
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    ||||||||||||||||||||||||||||| || ||| |||||||| |||||||||||||||||||||||    
T  39781284 tctaacggttgagattttaaattaaaaaacaataaa-ggttgttgcgatatgagagaagaagggaacat 39781217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 243
Target Start/End: Original strand, 33400865 - 33401005
Alignment:
Q  106 atgctcgatttatgctaagctccatttacttcatttaaggtttgaatttttgacatgtggcnnnnnnnn---tctaacggttgagattttaaattaaaaa 202  Q
    |||||| ||||| ||||||||||||||||| ||||||||||||| || |  | ||||||||           ||||| |||| |||||||||| ||||||    
T  33400865 atgctccatttaagctaagctccatttactccatttaaggtttggatgtaaggcatgtggcaaaaaaaagtatctaatggttaagattttaaactaaaaa 33400964  T
Q  203 ataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    | || |||| ||||||| |||||||||||||||||||||||    
T  33400965 acaataaaaagttgttgcgatatgagagaagaagggaacat 33401005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 102 - 243
Target Start/End: Original strand, 24882977 - 24883117
Alignment:
Q  102 gggtatgctcgatttatgctaagctccatttacttcatttaaggtttgaatttttgacatgtggcnnnnnnnntctaacggttgagattttaaattaaaa 201  Q
    |||||||||| ||||| ||||| ||||||||||| |||||| |||||| ||    |||| |||||        | |||||||||||||||||||||||||    
T  24882977 gggtatgctccatttaggctaatctccatttactccatttagggtttggatgcaagacacgtggcaaaaaaaatgtaacggttgagattttaaattaaaa 24883076  T
Q  202 aataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
       || |||||||||||| |||||||||||||||| ||||||    
T  24883077 tc-aataaaaggttgttgcgatatgagagaagaagagaacat 24883117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 5771988 - 5772056
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    ||||||||||||||||||||||||||| |  | |||||||||||| ||||| ||| |||||||||||||    
T  5771988 tctaacggttgagattttaaattaaaagactataaaaggttgttgcgatataagaaaagaagggaacat 5772056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 37949009 - 37948941
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    ||||| |||| |||||||||||||||||  || |||||||||||| ||||||||||||||| |||||||    
T  37949009 tctaatggttaagattttaaattaaaaataaataaaaggttgttgcgatatgagagaagaaaggaacat 37948941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 49777044 - 49776984
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaa 235  Q
    ||||||||||||||||||||||||||||| || ||||||||||||  |||||| |||||||    
T  49777044 tctaacggttgagattttaaattaaaaaacaataaaaggttgttgcaatatgaaagaagaa 49776984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 243
Target Start/End: Complemental strand, 13947141 - 13947075
Alignment:
Q  177 taacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    |||||||||| |||||||||||||||| || |||||||||||| ||||  ||||||||||| |||||    
T  13947141 taacggttgatattttaaattaaaaaacaataaaaggttgttgcgatacaagagaagaaggaaacat 13947075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 206
Target Start/End: Complemental strand, 3385532 - 3385501
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaataa 206  Q
    ||||||||||||||||||||||||||||||||    
T  3385532 tctaacggttgagattttaaattaaaaaataa 3385501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 203
Target Start/End: Complemental strand, 33156747 - 33156648
Alignment:
Q  104 gtatgctcgatttatgctaagctccatttacttcatttaaggtttgaatttttgacatgtggcnnnnnnnntctaacggttgagattttaaattaaaaaa 203  Q
    |||||||| ||||| ||||||||  ||||||| |||||| |||||| ||    ||||||||||        |||||||||||||||||||||||||||||    
T  33156747 gtatgctccatttaggctaagctttatttactccatttagggtttggatacaagacatgtggcaaaaaaaatctaacggttgagattttaaattaaaaaa 33156648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 152
Target Start/End: Complemental strand, 34622620 - 34622570
Alignment:
Q  102 gggtatgctcgatttatgctaagctccatttacttcatttaaggtttgaat 152  Q
    |||||||||| |||||  |||||||||| ||||| ||||||||||||||||    
T  34622620 gggtatgctccatttagactaagctccagttactccatttaaggtttgaat 34622570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Original strand, 13947002 - 13947030
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaa 203  Q
    |||||||||||||||||||||||||||||    
T  13947002 tctaacggttgagattttaaattaaaaaa 13947030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 24883189 - 24883161
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaa 203  Q
    |||||||||||||||||||||||||||||    
T  24883189 tctaacggttgagattttaaattaaaaaa 24883161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Original strand, 37948868 - 37948896
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaa 203  Q
    |||||||||||||||||||||||||||||    
T  37948868 tctaacggttgagattttaaattaaaaaa 37948896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 43297072 - 43297044
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaa 203  Q
    |||||||||||||||||||||||||||||    
T  43297072 tctaacggttgagattttaaattaaaaaa 43297044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 102 - 243
Target Start/End: Original strand, 17370073 - 17370215
Alignment:
Q  102 gggtatgctcgatttatgctaagctccatttacttcatttaaggtttgaatttttgacatgtggcnnnnnnnn-tctaacggttgagattttaaattaaa 200  Q
    |||||||||| ||||||||||| ||||||||||| |||||| |||||| ||    ||||||||||         ||||||||||||||||||||||||||    
T  17370073 gggtatgctccatttatgctaaactccatttactccatttagggtttggatgcaagacatgtggcaaaaaaatatctaacggttgagattttaaattaaa 17370172  T
Q  201 aaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    ||| || ||||||||||||  ||||||||||||||||||||||    
T  17370173 aaacaataaaaggttgttgcaatatgagagaagaagggaacat 17370215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 102 - 243
Target Start/End: Complemental strand, 31194260 - 31194118
Alignment:
Q  102 gggtatgctcgatttatgctaagctccatttacttcatttaaggtttgaatttttgacatgtggcnnnnnnnn-tctaacggttgagattttaaattaaa 200  Q
    |||||||||| ||||| ||||||||||||||||| ||||||||||||| ||    ||||||||||         || |||||||||||||||||||||||    
T  31194260 gggtatgctccatttaggctaagctccatttactccatttaaggtttggatgcaagacatgtggcaaaaaaatatccaacggttgagattttaaattaaa 31194161  T
Q  201 aaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    ||| || ||||||||||||  ||||||||||||||||||||||    
T  31194160 aaacaataaaaggttgttgccatatgagagaagaagggaacat 31194118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 14076748 - 14076816
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    ||||| ||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||    
T  14076748 tctaatggttgagattttaaattaaaaaacaataaaaggttgttgcgatatgagagaagaagggaacat 14076816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 42546570 - 42546502
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    ||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||| |||||||    
T  42546570 tctaacggttgagattttaaattaaaaaacaataaaaggttgttgcgatatgagagaagaatggaacat 42546502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 177 - 243
Target Start/End: Complemental strand, 39635022 - 39634956
Alignment:
Q  177 taacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    ||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||| ||||||    
T  39635022 taacggttgagattttaaattaaaaaacaataaaaggttgttgcgatatgagagaagaagagaacat 39634956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 177 - 243
Target Start/End: Original strand, 304093 - 304159
Alignment:
Q  177 taacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    ||||||||||||||||||||| ||||| || ||||| ||||||| ||||||||||||||||||||||    
T  304093 taacggttgagattttaaatttaaaaacaataaaagattgttgtaatatgagagaagaagggaacat 304159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 105 - 243
Target Start/End: Complemental strand, 32347189 - 32347050
Alignment:
Q  105 tatgctcgatttatgctaagctccatttacttcatttaaggtttgaatttttgacatgtggcnnnnnnnn-tctaacggttgagattttaaattaaaaaa 203  Q
    ||||||| ||||| ||||||||||| ||||| ||||||||||||| || |  |||||||| |         |||||| ||| |||| |||||||||||||    
T  32347189 tatgctccatttaggctaagctccaattactccatttaaggtttggatgtaagacatgtgacaaaaaaatatctaactgtttagatcttaaattaaaaaa 32347090  T
Q  204 taagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
     || ||||| |||||| |||||||||||||||||||||||    
T  32347089 caataaaagattgttgcgatatgagagaagaagggaacat 32347050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 8754738 - 8754785
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaataagaaaaggttgttgtga 222  Q
    |||||||||||| |||||||||||||||| || |||||||||||||||    
T  8754738 tctaacggttgaaattttaaattaaaaaacaataaaaggttgttgtga 8754785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 31193971 - 31194018
Alignment:
Q  102 gggtatgctcgatttatgctaagctccatttacttcatttaaggtttg 149  Q
    |||||||||| ||||| ||||||||||||||||| |||||||||||||    
T  31193971 gggtatgctccatttaggctaagctccatttactccatttaaggtttg 31194018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 203
Target Start/End: Original strand, 39634828 - 39634911
Alignment:
Q  119 gctaagctccatttacttcatttaaggtttgaatttttgacatgtggcnnnnnnnntctaacggttgagattttaaattaaaaaa 203  Q
    |||||||||||||||||||||| | |||||| || |  ||||||||||        |||||||||||||||||||||||||||||    
T  39634828 gctaagctccatttacttcatt-agggtttggatgtaagacatgtggcaaaaaaaatctaacggttgagattttaaattaaaaaa 39634911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Original strand, 42546429 - 42546457
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaa 203  Q
    |||||||||||||||||||||||||||||    
T  42546429 tctaacggttgagattttaaattaaaaaa 42546457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 35207258 - 35207326
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    ||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||    
T  35207258 tctaacggttgagattttaaattaaaaaacaataaaaggttgttgcgatatgagagaagaagggaacat 35207326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 26903649 - 26903581
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    |||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||| ||||||    
T  26903649 tctaacggttgagattttaaattaaaaaataataaaaagttgttgcgatatgagagaagaagagaacat 26903581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 29474634 - 29474566
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    |||||||||||| |||||||||||||||| || |||||||||||||||||||| |||||||||||||||    
T  29474634 tctaacggttgaaattttaaattaaaaaacaataaaaggttgttgtgatatgacagaagaagggaacat 29474566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 2834288 - 2834349
Alignment:
Q  182 gttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||    
T  2834288 gttgagattttaaattaaaaaacaataaaaggttgttgtgatatgagagaagaaggaaacat 2834349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 19318227 - 19318295
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    ||||||| ||||||||||||||||||||| || |||||||||||| ||||||||||||||| |||||||    
T  19318227 tctaacgattgagattttaaattaaaaaacaataaaaggttgttgcgatatgagagaagaaaggaacat 19318295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 48006204 - 48006272
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    ||||||||||||||||||||||||||||| || |||| ||||||| ||||||||| |||||||||||||    
T  48006204 tctaacggttgagattttaaattaaaaaacaataaaaagttgttgcgatatgagaaaagaagggaacat 48006272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 35363539 - 35363471
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    ||||| |||||||||||||||||||||||||| | || ||||||| |||||||||||| ||||||||||    
T  35363539 tctaatggttgagattttaaattaaaaaataatagaatgttgttgcgatatgagagaaaaagggaacat 35363471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 6408336 - 6408399
Alignment:
Q  177 taacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaa 240  Q
    ||||||||||||||||| ||||||||| || ||||||||| ||  |||||||||||||||||||    
T  6408336 taacggttgagattttatattaaaaaacaataaaaggttgctgccatatgagagaagaagggaa 6408399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 243
Target Start/End: Original strand, 3740725 - 3740791
Alignment:
Q  177 taacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    ||||| || |||||||||||||||||| || |||| ||||||  |||||||||||||||||||||||    
T  3740725 taacgattcagattttaaattaaaaaacaataaaatgttgttaagatatgagagaagaagggaacat 3740791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 148
Target Start/End: Complemental strand, 19318514 - 19318468
Alignment:
Q  102 gggtatgctcgatttatgctaagctccatttacttcatttaaggttt 148  Q
    |||||||||| ||||| ||||||||||||||||| ||||||||||||    
T  19318514 gggtatgctccatttaggctaagctccatttactccatttaaggttt 19318468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 25048319 - 25048279
Alignment:
Q  102 gggtatgctcgatttatgctaagctccatttacttcattta 142  Q
    |||||||||| ||||| ||||||||||||||||||||||||    
T  25048319 gggtatgctccatttaggctaagctccatttacttcattta 25048279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 148
Target Start/End: Complemental strand, 19318443 - 19318397
Alignment:
Q  102 gggtatgctcgatttatgctaagctccatttacttcatttaaggttt 148  Q
    |||||||||| ||||| |||||||| |||||||| ||||||||||||    
T  19318443 gggtatgctccatttaggctaagcttcatttactccatttaaggttt 19318397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 207
Target Start/End: Original strand, 35363400 - 35363430
Alignment:
Q  177 taacggttgagattttaaattaaaaaataag 207  Q
    |||||||||||||||||||||||||||||||    
T  35363400 taacggttgagattttaaattaaaaaataag 35363430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 206
Target Start/End: Complemental strand, 48006343 - 48006314
Alignment:
Q  177 taacggttgagattttaaattaaaaaataa 206  Q
    ||||||||||||||||||||||||||||||    
T  48006343 taacggttgagattttaaattaaaaaataa 48006314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 6408261 - 6408309
Alignment:
Q  104 gtatgctcgatttatgctaagctccatttacttcatttaaggtttgaat 152  Q
    |||||||| |||||  ||||||||||||||||||||||| | |||||||    
T  6408261 gtatgctccatttagtctaagctccatttacttcatttaggatttgaat 6408309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 6408475 - 6408447
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaa 203  Q
    |||||||||||||||||||||||||||||    
T  6408475 tctaacggttgagattttaaattaaaaaa 6408447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 206
Target Start/End: Original strand, 25048171 - 25048199
Alignment:
Q  178 aacggttgagattttaaattaaaaaataa 206  Q
    |||||||||||||||||||||||||||||    
T  25048171 aacggttgagattttaaattaaaaaataa 25048199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 206
Target Start/End: Complemental strand, 25048241 - 25048213
Alignment:
Q  178 aacggttgagattttaaattaaaaaataa 206  Q
    |||||||||||||||||||||||||||||    
T  25048241 aacggttgagattttaaattaaaaaataa 25048213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 105 - 243
Target Start/End: Original strand, 43797361 - 43797500
Alignment:
Q  105 tatgctcgatttatgctaagctccatttacttcatttaaggtttgaatttttgacatgtggcnnnnnnnn-tctaacggttgagattttaaattaaaaaa 203  Q
    ||||||| ||||| ||||||||||||||||| ||||||||||||| ||    ||||||||||         || ||||||||||||||||||||||||||    
T  43797361 tatgctccatttaggctaagctccatttactccatttaaggtttggatgcaagacatgtggcaaaaaaatatccaacggttgagattttaaattaaaaaa 43797460  T
Q  204 taagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
     || ||||||||||||  ||||||||||||||||||||||    
T  43797461 caataaaaggttgttgccatatgagagaagaagggaacat 43797500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 243
Target Start/End: Original strand, 29828759 - 29828825
Alignment:
Q  177 taacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    ||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||    
T  29828759 taacggttgagattttaaattaaaaaacaataaaaggttgttgcgatatgagagaagaagggaacat 29828825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 4041263 - 4041329
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaac 241  Q
    ||||||||||||||||||||||||||||| || ||||| |||||| |||||||||||||||||||||    
T  4041263 tctaacggttgagattttaaattaaaaaacaataaaagattgttgcgatatgagagaagaagggaac 4041329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 102 - 243
Target Start/End: Original strand, 8799323 - 8799464
Alignment:
Q  102 gggtatgctcgatttatgctaagctccatttacttcatttaaggtttgaatttttgacatgtggcnnnnnnnn-tctaacggttgagattttaaattaaa 200  Q
    |||||||||| ||||| |||| |||||||||||| |||||| |||||| ||    ||||||||||         |||||| |||||||||||||||||||    
T  8799323 gggtatgctccatttaggctaggctccatttactccatttagggtttggatgcaagacatgtggcaaaaatatatctaacagttgagattttaaattaaa 8799422  T
Q  201 aaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    |||||| ||| |||||||| |||||||||||||||||||||||    
T  8799423 aaataataaa-ggttgttgcgatatgagagaagaagggaacat 8799464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 102 - 243
Target Start/End: Complemental strand, 38500116 - 38499971
Alignment:
Q  102 gggtatgctcgatttatgctaagctccatttacttcatttaaggtttgaatttttgacatgtggcnnnnnnnntctaacggttgagattttaaattaaaa 201  Q
    |||||||||| ||||| ||||||||||||||||| || ||| |||||| || |  |||||||||         |||||| ||||||||||||||||||||    
T  38500116 gggtatgctccatttaggctaagctccatttactccaattagggtttggatgtaagacatgtggaaaaaaatatctaacagttgagattttaaattaaaa 38500017  T
Q  202 aataag----aaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    || ||     |||||||||||| |||||||||||||||||||||||    
T  38500016 aacaaacaataaaaggttgttgcgatatgagagaagaagggaacat 38499971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 176 - 243
Target Start/End: Complemental strand, 48346198 - 48346131
Alignment:
Q  176 ctaacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    |||||||||||||||||||||||||||| |  |||||||||||| |||||||||||||||| ||||||    
T  48346198 ctaacggttgagattttaaattaaaaaacagtaaaaggttgttgcgatatgagagaagaagagaacat 48346131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 234
Target Start/End: Complemental strand, 53197278 - 53197147
Alignment:
Q  102 gggtatgctcgatttatgctaagctccatttacttcatttaaggtttgaatttttgacatgtggcnnnnnnnntctaacggttgagattttaaattaaaa 201  Q
    |||||||||| ||||| |||||||| |||||||| |||||| |||||| ||    ||||||||||        ||||||| |  ||||||||||||||||    
T  53197278 gggtatgctccatttaggctaagcttcatttactccatttagggtttggatgcaagacatgtggcaaaaaatatctaacg-tcaagattttaaattaaaa 53197180  T
Q  202 aataagaaaaggttgttgtgatatgagagaaga 234  Q
    || || |||||||||||| ||||||||||||||    
T  53197179 aacaataaaaggttgttgcgatatgagagaaga 53197147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 46883495 - 46883553
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaag 233  Q
    ||||||||||||||||||||||||||||| || ||||||||||||  ||||||| ||||    
T  46883495 tctaacggttgagattttaaattaaaaaacaataaaaggttgttgcaatatgagggaag 46883553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 202
Target Start/End: Original strand, 38499825 - 38499925
Alignment:
Q  102 gggtatgctcgatttatgctaagctccatttacttcatttaaggtttgaatttttgacatgtggcnnnnnnnntctaacggttgagattttaaattaaaa 201  Q
    |||||||||| ||||| ||||||||||||||||| |||||| |||||| ||    ||||||||||        ||||||||||||||||||||| |||||    
T  38499825 gggtatgctccatttaggctaagctccatttactccatttagggtttggatacaagacatgtggcaaaaaaaatctaacggttgagattttaaactaaaa 38499924  T
Q  202 a 202  Q
    |    
T  38499925 a 38499925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 43797863 - 43797796
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    |||||||| ||||||||||||||| |||| || |||||||||||| ||||||| |||| ||| ||||||    
T  43797863 tctaacggatgagattttaaatta-aaaacaataaaaggttgttgcgatatgatagaaaaagagaacat 43797796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 206
Target Start/End: Complemental strand, 25349931 - 25349900
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaataa 206  Q
    ||||||||||||||||||||||||||||||||    
T  25349931 tctaacggttgagattttaaattaaaaaataa 25349900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 203
Target Start/End: Complemental strand, 4041478 - 4041376
Alignment:
Q  102 gggtatgctcgatttatgctaagctccatttacttcatttaaggtttgaatttttgacatgtggcnnnnnnnn-tctaacggttgagattttaaattaaa 200  Q
    |||||||||| ||||| |||||||| |||||||| |||||| |||||| ||    ||||||||||         ||||||||||||||||||||||||||    
T  4041478 gggtatgctccatttaggctaagcttcatttactccatttagggtttggatgcaagacatgtggcaaaaaaatatctaacggttgagattttaaattaaa 4041379  T
Q  201 aaa 203  Q
    |||    
T  4041378 aaa 4041376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 20383145 - 20383179
Alignment:
Q  208 aaaaggttgttgtgatatgagagaagaagggaaca 242  Q
    |||| ||||||||||||||||||||||||||||||    
T  20383145 aaaatgttgttgtgatatgagagaagaagggaaca 20383179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 20383256 - 20383228
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaa 203  Q
    |||||||||||||||||||||||||||||    
T  20383256 tctaacggttgagattttaaattaaaaaa 20383228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 29828902 - 29828874
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaa 203  Q
    |||||||||||||||||||||||||||||    
T  29828902 tctaacggttgagattttaaattaaaaaa 29828874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 46883633 - 46883605
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaa 203  Q
    |||||||||||||||||||||||||||||    
T  46883633 tctaacggttgagattttaaattaaaaaa 46883605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Original strand, 53197068 - 53197096
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaa 203  Q
    |||||||||||||||||||||||||||||    
T  53197068 tctaacggttgagattttaaattaaaaaa 53197096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 243
Target Start/End: Complemental strand, 11014540 - 11014474
Alignment:
Q  177 taacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    |||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  11014540 taacggttgaaattttaaattaaaaaataataaaaggttgttgcgatatgagagaagaagggaacat 11014474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 102 - 243
Target Start/End: Original strand, 22748594 - 22748736
Alignment:
Q  102 gggtatgctcgatttatgctaagctccatttacttcatttaaggtttgaatttttgacatgtggcnnnnnnnn-tctaacggttgagattttaaattaaa 200  Q
    |||||||||| ||||| |||| |||||||||||| |||||||| |||| ||    ||||||||||         || |||||||||||||||||||||||    
T  22748594 gggtatgctcaatttaggctatgctccatttactccatttaagatttggatgcaagacatgtggcaaaaaaatatccaacggttgagattttaaattaaa 22748693  T
Q  201 aaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    ||| || ||||||||||||  ||||||||||||||||||||||    
T  22748694 aaacaataaaaggttgttgccatatgagagaagaagggaacat 22748736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 16125743 - 16125683
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaa 235  Q
    |||||| | |||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  16125743 tctaacagatgagattttaaattaaaaaacaataaaaggttgttgtgatatgagagaagaa 16125683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 33277392 - 33277454
Alignment:
Q  181 ggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    |||||||||||||||||||||||||| | || ||||||| ||||||||||||||| |||||||    
T  33277392 ggttgagattttaaattaaaaaataatataaagttgttgcgatatgagagaagaatggaacat 33277454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 243
Target Start/End: Original strand, 24565206 - 24565253
Alignment:
Q  196 ttaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    ||||||||||| |||||||||||| || ||||||||||||||||||||    
T  24565206 ttaaaaaataataaaaggttgttgcgaaatgagagaagaagggaacat 24565253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 243
Target Start/End: Original strand, 34851398 - 34851454
Alignment:
Q  186 agattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    ||||||||||||||||| ||| |||||| |||||  ||||||||||||||||||||||    
T  34851398 agattttaaattaaaaa-taataaaaggctgttgcaatatgagagaagaagggaacat 34851454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 6705297 - 6705344
Alignment:
Q  179 acggttgagattttaaattaaaaaataagaaaaggttgttgtgatatg 226  Q
    ||||||||||||||||||||||||| || ||||| || ||||||||||    
T  6705297 acggttgagattttaaattaaaaaacaataaaagattattgtgatatg 6705344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 24565323 - 24565295
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaa 203  Q
    |||||||||||||||||||||||||||||    
T  24565323 tctaacggttgagattttaaattaaaaaa 24565295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 50544336 - 50544402
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaac 241  Q
    |||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  50544336 tctaacggatgagattttaaattaaaaaataataaaaggttgttgcgatatgagagaagaagggaac 50544402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 26297393 - 26297461
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||  |||||||||||||||| |||||    
T  26297393 tctaacgattgagattttaaattaaaaaataataaaaggttgttgcaatatgagagaagaaggaaacat 26297461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 7062054 - 7062118
Alignment:
Q  177 taacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaac 241  Q
    |||||||||||||||| |||||||||  || |||||||||||||||||||||||||||| |||||    
T  7062054 taacggttgagatttttaattaaaaatcaataaaaggttgttgtgatatgagagaagaatggaac 7062118  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 11790083 - 11790015
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    ||||||||||||||||||||||||||||| || ||||| |||||| || ||||||||||||||| ||||    
T  11790083 tctaacggttgagattttaaattaaaaaacaataaaagattgttgcgacatgagagaagaaggggacat 11790015  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 179 - 243
Target Start/End: Complemental strand, 9551442 - 9551377
Alignment:
Q  179 acggttgagattttaaattaaaaaat-aagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    |||||||||||||||||||||||||  || |||||||||||| | |||||||||||||||||||||    
T  9551442 acggttgagattttaaattaaaaaaacaataaaaggttgttgcgttatgagagaagaagggaacat 9551377  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 19037943 - 19037875
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    ||||||| ||||||| ||||||||||||| || |||||||||||| |||||||||||| || |||||||    
T  19037943 tctaacgattgagatgttaaattaaaaaacaataaaaggttgttgcgatatgagagaaaaatggaacat 19037875  T

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Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 32591361 - 32591309
Alignment:
Q  183 ttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaa 235  Q
    ||||||||||||||||||||| || |||||||||||| |||||||||||||||    
T  32591361 ttgagattttaaattaaaaaacaataaaaggttgttgcgatatgagagaagaa 32591309  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 23655147 - 23655214
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    |||||||||||| ||||||||||||||||||| |||||||| |||  ||||||| ||| ||||||||||    
T  23655147 tctaacggttgaaattttaaattaaaaaataataaaaggtttttgcaatatgagggaa-aagggaacat 23655214  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 235
Target Start/End: Complemental strand, 1025125 - 1025067
Alignment:
Q  177 taacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaa 235  Q
    ||||||||||||||||||||||||||| || |||| || |||| |||||||||| ||||    
T  1025125 taacggttgagattttaaattaaaaaacaataaaatgtggttgcgatatgagaggagaa 1025067  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 3556446 - 3556507
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaagaagg 237  Q
    ||||| ||||||||||||| ||||||||  || |||||||||||| |||||||||||||||||    
T  3556446 tctaagggttgagattttatattaaaaac-aataaaaggttgttgcgatatgagagaagaagg 3556507  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 46993147 - 46993204
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaataagaaaaggttgttgtgatatgagagaa 232  Q
    ||||||||||||||| |||||||||||||  | ||||| |||||| ||||||||||||    
T  46993147 tctaacggttgagatgttaaattaaaaaacgataaaagattgttgcgatatgagagaa 46993204  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 32591167 - 32591214
Alignment:
Q  102 gggtatgctcgatttatgctaagctccatttacttcatttaaggtttg 149  Q
    |||||||||| ||||| | ||||||||||||||| |||||||||||||    
T  32591167 gggtatgctctatttaggttaagctccatttactccatttaaggtttg 32591214  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 203
Target Start/End: Original strand, 5465859 - 5465961
Alignment:
Q  102 gggtatgctcgatttatgctaagctccatttacttcatttaaggtttgaatttttgacatgtggcnnnnnnnn-tctaacggttgagattttaaattaaa 200  Q
    |||||||||| ||||| |||||| | ||||||||||||||| |||||  || |  ||||||||||         ||||||||||||||||||||||||||    
T  5465859 gggtatgctccatttaggctaagtttcatttacttcatttagggtttagatgtaagacatgtggcaaaaaaatatctaacggttgagattttaaattaaa 5465958  T
Q  201 aaa 203  Q
    |||    
T  5465959 aaa 5465961  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 5466055 - 5466006
Alignment:
Q  194 aattaaaaaataagaaaaggttgttgtgatatgagagaagaagggaacat 243  Q
    |||||||||| || ||||| |||||| ||||||||| |||||||||||||    
T  5466055 aattaaaaaacaataaaagattgttgcgatatgagaaaagaagggaacat 5466006  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 241
Target Start/End: Complemental strand, 21785894 - 21785861
Alignment:
Q  208 aaaaggttgttgtgatatgagagaagaagggaac 241  Q
    |||||||||||| |||||||||||||||||||||    
T  21785894 aaaaggttgttgcgatatgagagaagaagggaac 21785861  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Original strand, 9551304 - 9551332
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaa 203  Q
    |||||||||||||||||||||||||||||    
T  9551304 tctaacggttgagattttaaattaaaaaa 9551332  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Original strand, 19037802 - 19037830
Alignment:
Q  175 tctaacggttgagattttaaattaaaaaa 203  Q
    |||||||||||||||||||||||||||||    
T  19037802 tctaacggttgagattttaaattaaaaaa 19037830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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