View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0571_low_5 (Length: 692)
Name: NF0571_low_5
Description: NF0571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0571_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 599; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 29 - 680
Target Start/End: Complemental strand, 11551339 - 11550680
Alignment:
| Q |
29 |
agagacaaattatggttggttatttgaatgagattctaggaattagagatgatcaaatacaactaaaagttgaacttcataagaaagcaaacctcaagca |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11551339 |
agagacaaattatggttggttatttgaatgagattctaggaattagagatgatcaaatacaactaaaagttgaactgcataagaaagcaaacctcaagca |
11551240 |
T |
|
| Q |
129 |
gcaagatacttgtattctaggtgagtaaaactagtgataatcactcaaataatcaaacaaataaggcaccgaagtacttgcagcgaaatgaagatccact |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11551239 |
gcaagatacttgtattctaggtgagtaaaactagtgataatcactcaaataatcaaacaaataaggcaccgaagtaattgcagcgaaatgaagatccact |
11551140 |
T |
|
| Q |
229 |
ggtgatcaatagtcattagtcattttgataccaaatatgtaaaatgaaaagcatgtgccccaaatcattttgagtta--------taactcagtatgaga |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
11551139 |
ggtgatcaatagtcattagtcattttgataccaaatatgtaaaatgaaaagcatgtgccccaaatcattttgagttaaatacttataactcagtatgaga |
11551040 |
T |
|
| Q |
321 |
caatatcatagcaataccaaataaaaatatgaactacatatatattcataaaattaaaagccaactcaatcattttgttgaaccaccatcggtaaaacta |
420 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||| |
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| T |
11551039 |
caatatcatagcaatgccaaataaaaatatgaactacatatatattcataaaattaaaagccaactcaatcattttgtcgaaccaccattgataaaacta |
11550940 |
T |
|
| Q |
421 |
cttgcatactcttccagaccaacaaaataaatagagtaaaagcagaacaaagtaccaatattcatatcctaaaagttcatgtttcatatagtcttgttgt |
520 |
Q |
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| T |
11550939 |
tttgcatactcttccagaccaacaaaataaatagagtaaaagcagaacaaagtaccaatattcatatcctaaaagttcatgtttcatatagtcttgttgt |
11550840 |
T |
|
| Q |
521 |
caactgtgaccagacaaacattgccatctttaattaattctactaagttgaaaagattagggtggttcaaaagacaaaaagctaaaaactctgcgagaaa |
620 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11550839 |
cagctgtgaccagacaaacattgccatctttaattaattctactaagttgaaaagattagggtggttcaaaagacaaaaagctaaaaactctgcgagaaa |
11550740 |
T |
|
| Q |
621 |
ttccttgttccgttgaaatccatttctgtcaagtggcttcagcgtaacaacctgcatctg |
680 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11550739 |
ttccttgttccgttgaaatccatttctgtcaagtggcttcagcgtaacaacctgcatctg |
11550680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 340 - 680
Target Start/End: Original strand, 11562218 - 11562559
Alignment:
| Q |
340 |
aataaaaatatgaactacatatatattcataaaattaaaagccaactcaatcattttgttgaaccaccatcggtaaaactacttgcatactcttccagac |
439 |
Q |
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||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||| ||||||||| | |||||||||||||||| ||||||||| |
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| T |
11562218 |
aataaaaatatgaactacatatagattcataaaataaaaagcaaactcaatcattttgtctaaccaccattgataaaactacttgcatattcttccagaa |
11562317 |
T |
|
| Q |
440 |
caacaaaataaatagagtaaaagcagaacaaagtaccaatattcatatcctaaaagttcatgtttcatatagtcttgtt-gtcaactgtgaccagacaaa |
538 |
Q |
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|| || ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
11562318 |
caccataataaatagagtaaaagcagaacaaagtaccaacatccatatcctaaaagttcatgtttcatatggtcttgtttgtcaactgtgaccagacaaa |
11562417 |
T |
|
| Q |
539 |
cattgccatctttaattaattctactaagttgaaaagattagggtggttcaaaagacaaaaagctaaaaactctgcgagaaattccttgttccgttgaaa |
638 |
Q |
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| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11562418 |
ccttgccatctttaattagttctactaagttgaaaagattagggtggttcaaaagacaaaaagctaaaaactctgcgagaaattccttgttctgttgaaa |
11562517 |
T |
|
| Q |
639 |
tccatttctgtcaagtggcttcagcgtaacaacctgcatctg |
680 |
Q |
| |
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||||||||||||||||||||||| |||||||||||| |||| |
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| T |
11562518 |
tccatttctgtcaagtggcttcacggtaacaacctgcgtctg |
11562559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 490 - 680
Target Start/End: Complemental strand, 11546180 - 11545990
Alignment:
| Q |
490 |
taaaagttcatgtttcatatagtcttgttgtcaactgtgaccagacaaacattgccatctttaattaattctactaagttgaaaagattagggtggttca |
589 |
Q |
| |
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||||||||||| ||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
11546180 |
taaaagttcataattcatatggtcttgttgtcaactgtgaccggacaaaccttgccatctttaattaattctactaagttgaaaagattaaggtggtgca |
11546081 |
T |
|
| Q |
590 |
aaagacaaaaagctaaaaactctgcgagaaattccttgttccgttgaaatccatttctgtcaagtggcttcagcgtaacaacctgcatctg |
680 |
Q |
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| T |
11546080 |
aaagacaaaaagctaaaaactctgcgagaaattccttgttccgttgaaatccatttctgtcaagtggcttcaccgtaacaacctgcgtctg |
11545990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 91 - 303
Target Start/End: Complemental strand, 11546487 - 11546264
Alignment:
| Q |
91 |
ctaaaagttgaacttcataagaaagcaaacctcaagcagcaagatacttgtattctaggtgagtaaaactagtgataatcactcaaataatcaaacaaat |
190 |
Q |
| |
|
|||||||||||||| ||||||||| || ||||| |||| ||||||| ||||||||| ||| ||| ||||||||| |||||| ||| ||||||||| |
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| T |
11546487 |
ctaaaagttgaactgaataagaaagtgaagttcaagaagcatgatacttatattctaggcaagtcaaattagtgataaccactcagctaagcaaacaaat |
11546388 |
T |
|
| Q |
191 |
aaggcaccgaagtacttgcagcgaaatgaagatccactggtgatcaatagtcatta---gtca--------ttttgataccaaatatgtaaaatgaaaag |
279 |
Q |
| |
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||||||| ||||| |||||| |||||||||||||| | ||||||||||| ||||| | || ||||||||| ||||||||||||||||||| |
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| T |
11546387 |
aaggcactgaagttattgcagtgaaatgaagatccaatagtgatcaatagccattataggacagacatatcttttgatacgaaatatgtaaaatgaaaag |
11546288 |
T |
|
| Q |
280 |
catgtgccccaaatcattttgagt |
303 |
Q |
| |
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||||| ||||||||||||| |||| |
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| T |
11546287 |
catgttccccaaatcatttcgagt |
11546264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 350 - 419
Target Start/End: Complemental strand, 11546264 - 11546195
Alignment:
| Q |
350 |
tgaactacatatatattcataaaattaaaagccaactcaatcattttgttgaaccaccatcggtaaaact |
419 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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|
| T |
11546264 |
tgaaatacatatagattcataaaattaaaagccaactcaatcattttgtctaaccaccatcaataaaact |
11546195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 11562142 - 11562216
Alignment:
| Q |
29 |
agagacaaattatggttggttatttgaatgagattctaggaattagagatgatcaaatacaactaaaagttgaact |
104 |
Q |
| |
|
||||||||| |||||| |||||||||||||||| || || ||||||||||||||||||| | |||||| ||||||| |
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|
| T |
11562142 |
agagacaaactatggt-ggttatttgaatgagagtcaagtaattagagatgatcaaatatagctaaaatttgaact |
11562216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 440 - 502
Target Start/End: Original strand, 1188202 - 1188264
Alignment:
| Q |
440 |
caacaaaataaatagagtaaaagcagaacaaagtaccaatattcatatcctaaaagttcatgt |
502 |
Q |
| |
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||||| ||||||| |||||||| ||||||||||||||| || ||||||||||||||||||| |
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|
| T |
1188202 |
caacacaataaatcaagtaaaaggagaacaaagtaccaaatttgatatcctaaaagttcatgt |
1188264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 455 - 507
Target Start/End: Complemental strand, 27472189 - 27472137
Alignment:
| Q |
455 |
agtaaaagcagaacaaagtaccaatattcatatcctaaaagttcatgtttcat |
507 |
Q |
| |
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|||||||||||||||||||||||| || ||||||||| | ||||||||||| |
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|
| T |
27472189 |
agtaaaagcagaacaaagtaccaacatcaatatcctaacaaatcatgtttcat |
27472137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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