View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0571_low_7 (Length: 656)
Name: NF0571_low_7
Description: NF0571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0571_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 180 - 626
Target Start/End: Complemental strand, 42524509 - 42524060
Alignment:
| Q |
180 |
taattgaaagaaaaatcaagtgattgaatttatatatataaaattattgtcatacaaaagaggaattcatagtaaatgaatttgagccatatgccaaatt |
279 |
Q |
| |
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||||||||||||||||||| | ||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42524509 |
taattgaaagaaaaatcaactaattgaatttatatatataaaatttttgtcatacagcagaggaattcgtagtaaatgaatttgagccatatgccaaatt |
42524410 |
T |
|
| Q |
280 |
ccttagaacagtactttacaattagctaagctatgaaggtgataaaataacaaatcttgtgtgttcaacatctcatctacatggttgctttcatgcccaa |
379 |
Q |
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||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
42524409 |
ccttagaacagtactttacaactagctaagctatgaaggtaataaaataacaaatcttgtgtgttcatcctctcatctacatggttgctttcatgcccaa |
42524310 |
T |
|
| Q |
380 |
cgaagtttttccagttatgcaatggattcgagcttccatcttcagttcattagacttattttcttgaccaatagaatcaatgtaacagtgatgcaacatc |
479 |
Q |
| |
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|||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42524309 |
cgaagttttttcagttatgcaatggatttgagcttccatcttcagttcatcagacttattttcttgaccaatagaatcaatgtaacagtgatgcaacatc |
42524210 |
T |
|
| Q |
480 |
ttcaatcctccagtataaccatgttgcctcattcttaatgcaaatggatgctcaccatccaacacctgtaaaaagaca---taattagtttatcttaata |
576 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42524209 |
ttcaatcctccagtataaccatgttgcctcattcttaatgcaaatggatgctcaccatccaacacctgtaaaaagacatagtaattagtttatcttaata |
42524110 |
T |
|
| Q |
577 |
taacaaaaacaatgactcttagaataaataaaaattaatgtttttctatt |
626 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42524109 |
taacaaaaacaatgactcttagaataaataaaaattaatgtttttctatt |
42524060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 180 - 558
Target Start/End: Complemental strand, 42508395 - 42508015
Alignment:
| Q |
180 |
taattgaaagaaaaatcaagtgattgaatttatatatataaa--attattgtcatacaaaagaggaattcatagtaaatgaatttgagccatatgccaaa |
277 |
Q |
| |
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||||||||||||||||||| | | |||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
42508395 |
taattgaaagaaaaatcaactaagtgaatttatatatatatataattattgtcatacagaagaggaattcatagtaaatgaatttgagccatatgccaaa |
42508296 |
T |
|
| Q |
278 |
ttccttagaacagtactttacaattagctaagctatgaaggtgataaaataacaaatcttgtgtgttcaacatctcatctacatggttgctttcatgccc |
377 |
Q |
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|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||| |
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| T |
42508295 |
ttccttagaacaatactttacaactagctaagctatgaaggtgataaaataacaaatcttgtgtgttcatcctctcatctacatagttgctttcatgccc |
42508196 |
T |
|
| Q |
378 |
aacgaagtttttccagttatgcaatggattcgagcttccatcttcagttcattagacttattttcttgaccaatagaatcaatgtaacagtgatgcaaca |
477 |
Q |
| |
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|||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42508195 |
aacgaagttttttcagttatgcaatggatttgagcttccatcttcagttcatcagacttattttcttgaccaatagaatcaatgtaacagtgatgcaaca |
42508096 |
T |
|
| Q |
478 |
tcttcaatcctccagtataaccatgttgcctcattcttaatgcaaatggatgctcaccatccaacacctgtaaaaagacat |
558 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
42508095 |
tcttcaatcctccagtataaccatgttgcctcattcttaatgcaaatggatgctcaccacccaaaacctgtaaaaagacat |
42508015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 352 - 626
Target Start/End: Complemental strand, 42517682 - 42517406
Alignment:
| Q |
352 |
tcatctacatggttgctttcatgcccaacgaagtttttccagttatgcaatggattcgagcttccatcttcagttcattagacttattttcttgaccaat |
451 |
Q |
| |
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|||||||||| |||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42517682 |
tcatctacatagttgctttcatgcccaacaaagttttttcagttatgcaatggatttgagcttccatcttcagttcatcagacttattttcttgaccaat |
42517583 |
T |
|
| Q |
452 |
agaatcaatgtaacagtgatgcaacatcttcaatcctccagtataaccatgttgcctcattcttaatgcaaatggatgctcaccatccaacacctgtaaa |
551 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42517582 |
agaatcaatgtaacagtgatgcaacatcttcaatcctccagtataaccatgttgcctcattcttaatgcaaatggatgctcaccatccaacacctgtaaa |
42517483 |
T |
|
| Q |
552 |
aagacata--attagtttatcttaatataacaaaaacaatgactcttagaataaataaaaattaatgtttttctatt |
626 |
Q |
| |
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|||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42517482 |
aagacatagtaattgtttatcttaatataacaaaaacaatgactcttagaataaataaaaattaatgtttttctatt |
42517406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 30 - 319
Target Start/End: Complemental strand, 42518074 - 42517777
Alignment:
| Q |
30 |
catgcaactaattattaatagacaattttaagtatatcattgagaaaaatgagataatatatagttgagatagactcacataagcacgttatgtgcaacc |
129 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42518074 |
catgcaactaattattaaaagacaattttaagtatatgattgagaaaaatgagataatatatagttgagatagactcacataagcacgttatgtgcaacc |
42517975 |
T |
|
| Q |
130 |
aacttaatcacactgattgcctaaagactaataagtaatcctcgatttggtaattgaaagaaaaatcaagtgattgaatttatatatataaaattattgt |
229 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
42517974 |
aacttaatcacaccgattgcctaaagactaataagtaatcctcgaattggtaattgaaagaaaaatcaagtgattgaatttatatatatagaattattgt |
42517875 |
T |
|
| Q |
230 |
catacaaaagaggaattcatagtaaatgaatttgagccatat--------gccaaattccttagaacagtactttacaattagctaagctatgaaggt |
319 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| ||||||| || || ||||| |||||||||||||||| |||||||||||||||||| |
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|
| T |
42517874 |
catacaggagaggaattcatagcaaatgaatttgggccatatacctagggccctaaatccttggaacagtactttacaactagctaagctatgaaggt |
42517777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 40 - 137
Target Start/End: Complemental strand, 42524602 - 42524506
Alignment:
| Q |
40 |
attattaatagacaattttaagtatatcattgagaaaaatgagataatatatagttgagatagactcacataagcacgttatgtgcaaccaacttaat |
137 |
Q |
| |
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|||||||| ||||||||| | |||||| ||| |||||||| ||||||| | |||||||| ||||||||||||||| | |||||||||||||||||||| |
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|
| T |
42524602 |
attattaagagacaatttga-gtatattatttagaaaaattagataatgtgtagttgagttagactcacataagctccttatgtgcaaccaacttaat |
42524506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 42508496 - 42508423
Alignment:
| Q |
40 |
attattaatagacaattttaagtatatcattgagaaaaatgagataatatatagttgagatagactcacataagc |
114 |
Q |
| |
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|||||||| ||||||||| | |||||| ||| |||||||| ||||||| | |||||||| ||||||||||||||| |
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| T |
42508496 |
attattaagagacaatttga-gtatattatttagaaaaattagataatgtgtagttgagttagactcacataagc |
42508423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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