View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0572_high_1 (Length: 592)
Name: NF0572_high_1
Description: NF0572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0572_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 28 - 502
Target Start/End: Original strand, 9921375 - 9921849
Alignment:
| Q |
28 |
atggacatcatcaccactgaggctgttgataaatgcaatgaagagagtcgaaagatcattagtggtgaggatataatacgggccatgggtaggttagggt |
127 |
Q |
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| T |
9921375 |
atgggcatcatcaccactgaggctgttgagaaatgcaatgaagagagtcgaaagatcattagcggtgaagatataatacgggccatgggtaggttagggt |
9921474 |
T |
|
| Q |
128 |
ttgaggactatgttggtcctctatctcttctcctccaaaactatcgcaaccatgaggctcaattcagtggcatgtcaactgcttgtggattcaacatgga |
227 |
Q |
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| T |
9921475 |
ttgaggactatgttggtcctctatctcttctcctccaaaactatcgcaaccatgaggctcaattcagtggcatgtcaactgcttgtggattcaacatgga |
9921574 |
T |
|
| Q |
228 |
tgggttgggtgctggtggctcgagcagtggtaatggccaatattgatatgcaattaatgtgatgccctatctatcgtacaataaaatgtgcttatggaag |
327 |
Q |
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| T |
9921575 |
tgggtcgggtactggtggctcgagcagtggtaatggccaatattgatatgcaattaatgtgatgccctatctatcgtacaataaaatgtgcttatggaag |
9921674 |
T |
|
| Q |
328 |
aaaagnnnnnnngtaatgattatggatatggttaaaataagttgtgcttaaaacttcataaattggtggtatttgaaagtatgttagttccttcttttta |
427 |
Q |
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| T |
9921675 |
aaaagtttttttgtaatagttatggatatggttaaattaagttgtgcttaaaacttcataaattggtgctatttgaaagtatgttagttccttcttttta |
9921774 |
T |
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| Q |
428 |
aggttgttttatttcatttgggtttcaatggtgatttgagtaattactaaatgtcatatatggaaaaacttgaga |
502 |
Q |
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| T |
9921775 |
aggttgttttatttcatttgggtttcaatggtgatttgagtaattactgaatgtcatatatggaaaaacttgaga |
9921849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 9911315 - 9911448
Alignment:
| Q |
45 |
tgaggctgttgataaatgcaatgaagagagtcgaaagatcattagtggtgaggatataatac-gggccatgggtaggttagggtttgaggactatgttgg |
143 |
Q |
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| T |
9911315 |
tgaggttgttgataaatgcaatgaagagagtcgaaagatcattagtggtaaagatttaaatctgggccatgggtaggttagggtttgaggactatgttgg |
9911414 |
T |
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| Q |
144 |
tcctctatctcttctcctccaaaactatcgcaac |
177 |
Q |
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| T |
9911415 |
tcctctatctcttctcctccaaaactatcgcaac |
9911448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 348 - 429
Target Start/End: Original strand, 9911488 - 9911568
Alignment:
| Q |
348 |
tatggatatggttaaaataagttgtgcttaaaacttcataaattggtggtatttgaaagtatgttagttccttctttttaag |
429 |
Q |
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| T |
9911488 |
tatggatatggttaaaataagttgtgcttaaaacttcatgaattggtgg-cgttgaaagtatgttggttcgttctttttaag |
9911568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 277
Target Start/End: Original strand, 9911449 - 9911491
Alignment:
| Q |
235 |
ggtgctggtggctcgagcagtggtaatggccaatattgatatg |
277 |
Q |
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| T |
9911449 |
ggtgctagtggctcgagcagtggcaatggccaacattgatatg |
9911491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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