View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0572_high_2 (Length: 491)
Name: NF0572_high_2
Description: NF0572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0572_high_2 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 22 - 491
Target Start/End: Original strand, 467835 - 468303
Alignment:
| Q |
22 |
catcatcacagaatgacatgcaagtaaacattaactaataaccattatatatcgtttttcaaattcattttttatgacgaaacagactaaatagttaata |
121 |
Q |
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| T |
467835 |
catcattacagaatgacatgcaagtaaacattaactaataaccattatatatcgtttttcaaattcattttttatgacgaaacagactaaatagttaata |
467934 |
T |
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| Q |
122 |
tgaatgcatattaacataatgaatttgattttctcttatttattggaacgaacaacaaattattacaatgattcagatcctagttcaaaatattacatct |
221 |
Q |
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| T |
467935 |
tgaatgcatattaacataatgaatttgattttctcttatttattggaacaaacaacaaattattacaatgattcagatcctagttcaaaatattacatct |
468034 |
T |
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| Q |
222 |
aaatggttggtttnnnnnnnntacatgttatcgtatcaatatttcacatgtattattgtgtcgtgactcgtgcagttttatgaataggtaaaagccatgg |
321 |
Q |
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| T |
468035 |
aaatggttggtttaaaaaaaatacatgttatcgtatcaatatttcacatgtattattgtgtcgtgactcgtgcagttttatgaataggtaaaagccatgg |
468134 |
T |
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| Q |
322 |
cctgatattttgtttccattcttgaagttgaaacaaatattttgattcttaattcttcaggatattaagggactgtttactttgtgaaaaccnnnnnnna |
421 |
Q |
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| T |
468135 |
cctggtattttgtttccattcttgaagttgaaacaaatattttgattcttaattcttcaggatattaagggactgtttactttgtgaaaaacttttttta |
468234 |
T |
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| Q |
422 |
ttttcatctcttaaaatttgtgttagttttgcttgttaataaggaagaaaagtgactttgaagtgaacac |
491 |
Q |
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| T |
468235 |
ttttcatttcttaaaatttgtgttagttttgcttgttaataaggaa-aaaagtgactttgaagtgaacac |
468303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 434 - 489
Target Start/End: Original strand, 31686724 - 31686779
Alignment:
| Q |
434 |
aaaatttgtgttagttttgcttgttaataaggaagaaaagtgact-ttgaagtgaac |
489 |
Q |
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| T |
31686724 |
aaaatttgtgttagttttacttgttaacaagg-agaaaagagactcttgaagtgaac |
31686779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 421 - 490
Target Start/End: Complemental strand, 27803107 - 27803038
Alignment:
| Q |
421 |
attttcatctcttaaaatttgtgttagttttgcttgttaataaggaagaaaagtgact-ttgaagtgaaca |
490 |
Q |
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|||||||| || ||||| ||||||||||||| |||||||| |||| ||||||| |||| |||||||||||| |
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| T |
27803107 |
attttcatttcctaaaacttgtgttagttttacttgttaacaagg-agaaaagagactcttgaagtgaaca |
27803038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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