View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0572_high_20 (Length: 252)
Name: NF0572_high_20
Description: NF0572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0572_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 236
Target Start/End: Original strand, 28907826 - 28908051
Alignment:
| Q |
10 |
gcacagagaagcatcataactatgtgaggaagactgctgagcttgcaatccagttttgtatcaatcctgctatcagccagcctaatgtttctggattaat |
109 |
Q |
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| T |
28907826 |
gcacagagaagcatcataactatgtgaggaagactgctgagcttgcaatccagttttatatcaatcctgctaccagccagcctaatgtttctggattaat |
28907925 |
T |
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| Q |
110 |
tcttgctggttctgctgatttcaaaactgagcttagcaagtcagatatgtttgatccccttcttcaagcaaaaatagttaatgttgtccatgtatcttat |
209 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28907926 |
tcttgctg-ttctgctgatttcaaaactgagcttagcaagtcagatatgtttgatccccttcttcaagcaaaaatagttaatgttgtcgatgtatcttat |
28908024 |
T |
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| Q |
210 |
ggaggggagaatgggttcaatgaggct |
236 |
Q |
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| T |
28908025 |
ggaggggagaatgggttcaatgaggct |
28908051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 28920999 - 28921220
Alignment:
| Q |
15 |
gagaagcatcataactatgtgaggaagactgctgagcttgcaatccagttttgtatcaatcctgctatcagccagcctaatgtttctggattaattcttg |
114 |
Q |
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||||||| ||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
28920999 |
gagaagcgtcataactacgtgaggaagactgctgagcttgcaacccagttttatatcaatcctgctaccagccagcctaatgtggctggattaattcttg |
28921098 |
T |
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| Q |
115 |
ctggttctgctgatttcaaaactgagcttagcaagtcagatatgtttgatccccttcttcaagcaaaaatagttaatgttgtccatgtatcttatggagg |
214 |
Q |
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| T |
28921099 |
ctggttctgctgatttcaaaactgagcttagtcagtcagatatgtttgatccccgtcttcaggcaaaaatacttaatgttgtagatgtatcttatggagg |
28921198 |
T |
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| Q |
215 |
ggagaatgggttcaatgaggct |
236 |
Q |
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||||||||||| ||| ||||| |
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| T |
28921199 |
tgagaatgggtttaatcaggct |
28921220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 28898060 - 28898254
Alignment:
| Q |
26 |
taactatgtgaggaagactgctgagcttgcaatccagttttgtatcaatcctgctatcagccagcctaatgtttctggattaattcttgctggttctgct |
125 |
Q |
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|||| ||| ||||||||||| ||||||||||| | | ||| |||| ||||| || | | ||||||||||||| ||||||||| ||||||||||||| | |
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| T |
28898060 |
taaccatgggaggaagactgatgagcttgcaagcatgctttatatcgatcctaatacccgacagcctaatgtttgtggattaatacttgctggttctgtt |
28898159 |
T |
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| Q |
126 |
gatttcaaaactgagcttagcaagtcagatatgtttgatccccttcttcaagcaaaaatagttaatgttgtccatgtatcttatggaggggagaatgg |
223 |
Q |
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| T |
28898160 |
gaatacaaaactagac--agttagtt-gatataattgatccccttcttaaggaaaaaatagttaatgttgtcgatgtatcttatggagaggagaatgg |
28898254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 10 - 219
Target Start/End: Original strand, 42891677 - 42891886
Alignment:
| Q |
10 |
gcacagagaagcatcataactatgtgaggaagactgctgagcttgcaatccagttttgtatcaatcctgctatcagccagcctaatgtttctggattaat |
109 |
Q |
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|||||||||||| ||||||||| |||||||||||||| |||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42891677 |
gcacagagaagcgtcataactacgtgaggaagactgccgagcttgcaacccagttttatatcaatcctgctaccagccagcctaatgtttctggattaat |
42891776 |
T |
|
| Q |
110 |
tcttgctggttctgctgatttcaaaactgagcttagcaagtcagatatgtttgatccccttcttcaagcaaaaatagttaatgttgtccatgtatcttat |
209 |
Q |
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| T |
42891777 |
acttgctggttctgctgatttcaaaactgagcttagtaagtcagatatgttcgatccccgtcttcaggcaaaactacttaatgttgtagatgtatcttat |
42891876 |
T |
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| Q |
210 |
ggaggggaga |
219 |
Q |
| |
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|||||||||| |
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| T |
42891877 |
ggaggggaga |
42891886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 23 - 236
Target Start/End: Original strand, 42896535 - 42896748
Alignment:
| Q |
23 |
tcataactatgtgaggaagactgctgagcttgcaatccagttttgtatcaatcctgctatcagccagcctaatgtttctggattaattcttgctggttct |
122 |
Q |
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| T |
42896535 |
tcataactatgtgaagaagactgttgaccttgcaacacagttctatatcaatcctgctaccagccagcctaatgtttctggattaatacttgctggttct |
42896634 |
T |
|
| Q |
123 |
gctgatttcaaaactgagcttagcaagtcagatatgtttgatccccttcttcaagcaaaaatagttaatgttgtccatgtatcttatggaggggagaatg |
222 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||| || || |||||| ||||||| |||||||||||| ||| |
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| T |
42896635 |
gctgatttcaaaactgagcttagtcagtcagatatgtttgatccccgtcttcaggcaaaagtacttggtgttgtagatgtatcctatggaggggagtatg |
42896734 |
T |
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| Q |
223 |
ggttcaatgaggct |
236 |
Q |
| |
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| || ||| ||||| |
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| T |
42896735 |
gatttaatcaggct |
42896748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 36 - 223
Target Start/End: Complemental strand, 32764046 - 32763859
Alignment:
| Q |
36 |
aggaagactgctgagcttgcaatccagttttgtatcaatcctgctatcagccagcctaatgtttctggattaattcttgctggttctgctgatttcaaaa |
135 |
Q |
| |
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||||||||||| || ||||| | ||||||| ||||| ||||||| ||| |||||||||||| ||||| | |||||||||||||| ||||| ||||| | |
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| T |
32764046 |
aggaagactgcagaacttgccactcagttttacatcaaccctgctaccagtcagcctaatgttgctggactcattcttgctggttcagctgacttcaaga |
32763947 |
T |
|
| Q |
136 |
ctgagcttagcaagtcagatatgtttgatccccttcttcaagcaaaaatagttaatgttgtccatgtatcttatggaggggagaatgg |
223 |
Q |
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| T |
32763946 |
ctgagctgagtcaatcagatatgtttgatcctcgtttgcaagcaaaaatattaaatgtggttgatgtctcttatggtggggaaaatgg |
32763859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 44878090 - 44878050
Alignment:
| Q |
121 |
ctgctgatttcaaaactgagcttagcaagtcagatatgttt |
161 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||| |
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| T |
44878090 |
ctgctgatttcaaaactgagcttagtcagtcagatatgttt |
44878050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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