View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0572_high_3 (Length: 486)
Name: NF0572_high_3
Description: NF0572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0572_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 430; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 30 - 483
Target Start/End: Complemental strand, 10705973 - 10705520
Alignment:
| Q |
30 |
ctacggccaagtgccaacctaatatgtcgaactctgacttaagatgtcatgttctcatatttgttcggctcacctagaaagtaacgaatgtatgaatggc |
129 |
Q |
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| T |
10705973 |
ctacggccaagtgccaacctaatatgtcgaactctggcttaagatgtaatgttctcatatttgttcggctcacctagaaagtaacgaatgtatgaatggc |
10705874 |
T |
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| Q |
130 |
gtgcttatgtaagaggcattcccctcatcctcttttagcttgcaaaattgaggaagctgtatttaatagttatgcacttctgcccttcgcatcgactaaa |
229 |
Q |
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| T |
10705873 |
gtgcttatgtaagaggcattcccctcatcctcttttagcttgcaaaattgaggaagctgtatttaatagttatgcacttctgcccttcgcatcgactaaa |
10705774 |
T |
|
| Q |
230 |
tattatccccttggtctatgttgccattagatttaaatagcgcccgagtgttgcaccacttacctacgcggtgccacatccaagaagtgagtaataataa |
329 |
Q |
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| T |
10705773 |
tattatccccttggtctatgttgccattagagttaaatagcgcctgagtgttgcaccacttacctacgcggtgccacatcccagaagtgagtaataataa |
10705674 |
T |
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| Q |
330 |
ccattaccgccacattcactgctagatatcaaggcaccaagagaaatttgagttctctgaacatcatttccgtatggcattccgaatcaacccaaaatct |
429 |
Q |
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| T |
10705673 |
ccattaccgccacattcactgctagatatcaaggcaccaagagaaatttgagttctctgaacatcatttccgtatggcattccgaatcaacccaaaatct |
10705574 |
T |
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| Q |
430 |
tcagttggaactgctttgcattcggctattttagcagataagaataatctaccc |
483 |
Q |
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| T |
10705573 |
tcagttggaactgctttgcattcggctattttagcagataagaaaaatctaccc |
10705520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 364 - 431
Target Start/End: Original strand, 6391498 - 6391565
Alignment:
| Q |
364 |
caccaagagaaatttgagttctctgaacatcatttccgtatggcattccgaatcaacccaaaatcttc |
431 |
Q |
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| T |
6391498 |
caccaagagaaatttgagttctctgaacatcatttccgtatggctttccgaatcaacccaaaatcttc |
6391565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 6388769 - 6388801
Alignment:
| Q |
30 |
ctacggccaagtgccaacctaatatgtcgaact |
62 |
Q |
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||||||||||||||||||||||||||| ||||| |
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| T |
6388769 |
ctacggccaagtgccaacctaatatgttgaact |
6388801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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