View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0572_low_10 (Length: 421)
Name: NF0572_low_10
Description: NF0572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0572_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 1316002 - 1315592
Alignment:
| Q |
1 |
atgaatttgcctactttatttctaatcgacccggacatcagtggtatgatgagtgccttgtatgaggtctatctgtcgcgttactcggatgactatgatg |
100 |
Q |
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| T |
1316002 |
atgaatttgcctactttatttctaatcgacccggacatcagtggtatgatgagtgccttgtatgaggtctatctgtcgcgttactcggatgactatgatg |
1315903 |
T |
|
| Q |
101 |
aagc-cctccggttgatcaatattttacagtcccaactaagtccctcaatgtcaaacacagcatggcttgtttgcaccaaaacaacacaacttctctggc |
199 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1315902 |
aagctcctccggttgatcaatattttacagtcccaactaagtccctccatgtcatacacagcatggcttgtttgcaccaaaacaacacaacttctctggc |
1315803 |
T |
|
| Q |
200 |
tgacttgagtatatgcatcatatcgtacctgcctcgcaacaagtcttcctaaatttgagccacattattcacctacatcacacccaagaggattctttgg |
299 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1315802 |
tgacttgagtttatgcatcatatcgtacctgcctcgcaacaagtcttcctaaacttgagccacattattcacctatatcacacccaagaggattctttgg |
1315703 |
T |
|
| Q |
300 |
atttacattactcacttgcactatccccacacaacaactcaagatacttgaccaacttcattttccaacaccattctactaccaaactttcttggaactc |
399 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1315702 |
atttacattactcacttgcactattcccacacaacaactcaagatacttgaccaacttcattttccaacaccattctactaccaaactttctt-gaactc |
1315604 |
T |
|
| Q |
400 |
acttcacctatg |
411 |
Q |
| |
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|||||||||||| |
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|
| T |
1315603 |
acttcacctatg |
1315592 |
T |
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