View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0572_low_15 (Length: 392)

Name: NF0572_low_15
Description: NF0572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0572_low_15
NF0572_low_15
[»] chr1 (2 HSPs)
chr1 (30-210)||(12800877-12801056)
chr1 (239-380)||(12800708-12800850)


Alignment Details
Target: chr1 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 30 - 210
Target Start/End: Complemental strand, 12801056 - 12800877
Alignment:
Q  30 gcaatgaacaacatggatcctaaattggaatcaacacaaggaaatcaacctttttgaagatcaacaatggaaaaagctgttgggtgatgatataaattaa 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12801056 gcaatgaacaacatggatcctaaattggaatcaacacaaggaaatcaacctttttgaagatcaacaatggaaaaagctgttgggtgatgatataaattaa 12800957  T
Q  130 ataggaagcnnnnnnnnnntgtttatcaacattttacatgttctagtttatgacctcaaaaacaatgccctagttttaaac 210  Q
    |||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12800956 ataggaagcaaaaaaaaaa-gtttatcaacattttacatgttctagtttatgacctcaaaaacaatgccctagttttaaac 12800877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 239 - 380
Target Start/End: Complemental strand, 12800850 - 12800708
Alignment:
Q  239 gtaattgacaattggtattttagtttatgaattctaaaatgtgcgatg-atgtgccatcaagacaggaaaaaccttcgagctcaatgaaacttacaaaaa 337  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12800850 gtaattgacaattggtattttagtttatgaattctaaaatgtgcaatgtatgtgccatcaagacatgaaaaaccttcgagctcaatgaaacttacaaaaa 12800751  T
Q  338 taattatatttacctcttgacaaggaaattaatcgagaatatt 380  Q
    |||||||||||||||||||| |||||||||| |||||||||||    
T  12800750 taattatatttacctcttgataaggaaattagtcgagaatatt 12800708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University