View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0572_low_17 (Length: 338)
Name: NF0572_low_17
Description: NF0572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0572_low_17 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 71 - 338
Target Start/End: Complemental strand, 19249295 - 19249028
Alignment:
| Q |
71 |
attacttgatgtgcaagtaattctgaattaagatggagttcatagtgtaatactttaatattagccaatgatctattacttgatgtgcaagtaattctga |
170 |
Q |
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| T |
19249295 |
attacttgatgtgcaagtaattctgaattaagatggagttcatagtgtaatattttaatattagccaatgatctattacttgatgtgcaagtaattctga |
19249196 |
T |
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| Q |
171 |
aatttcaaatttcggttttgttaggtaatgtagttaattcggttatgagtcacgggtgtgtgatgtatcatataccatatgcatataaatacctacaagt |
270 |
Q |
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| T |
19249195 |
aatttcaaatttcagttttgttaggtaaggtagttaattcggttatgtgtcacgcgtgtgtgatgtatcatataccatatgcatataaatacctacaagt |
19249096 |
T |
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| Q |
271 |
gtgaaatgaatagcaacatcacaattactgattttctccccaattttctaaattctttatctccttct |
338 |
Q |
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| T |
19249095 |
gtgaaatgaatagcaacatcacaattactgattttctccccaattttctaaaatctttatctccttct |
19249028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 19249291 - 19249195
Alignment:
| Q |
1 |
cttgatgtgcaagtaattctgaattaagatggagttcatagtgtaatactttaatattagccaatgatctattacttgatgtgcaagtaattctgaa |
97 |
Q |
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| T |
19249291 |
cttgatgtgcaagtaattctgaattaagatggagttcatagtgtaatattttaatattagccaatgatctattacttgatgtgcaagtaattctgaa |
19249195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 127 - 248
Target Start/End: Complemental strand, 22583508 - 22583381
Alignment:
| Q |
127 |
aatattagccaatgatctattacttgatgtgcaagtaatt------ctgaaatttcaaatttcggttttgttaggtaatgtagttaattcggttatgagt |
220 |
Q |
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||||||||| |||||||||||||||||||| ||||||||| || ||||| ||| ||| ||||||||| ||||| ||||| || ||||||||| |
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| T |
22583508 |
aatattagctaatgatctattacttgatgtacaagtaattgagtaactaaaattataaaattctattttgttagttaatgcagttattttggttatgagc |
22583409 |
T |
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| Q |
221 |
cacgggtgtgtgatgtatcatataccat |
248 |
Q |
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||| ||||| ||| ||||||||||||| |
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| T |
22583408 |
cacatgtgtgcgatatatcatataccat |
22583381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 92
Target Start/End: Complemental strand, 22583508 - 22583469
Alignment:
| Q |
53 |
aatattagccaatgatctattacttgatgtgcaagtaatt |
92 |
Q |
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||||||||| |||||||||||||||||||| ||||||||| |
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| T |
22583508 |
aatattagctaatgatctattacttgatgtacaagtaatt |
22583469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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