View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0572_low_18 (Length: 308)
Name: NF0572_low_18
Description: NF0572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0572_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 11 - 279
Target Start/End: Complemental strand, 6392944 - 6392676
Alignment:
| Q |
11 |
cacagaaacataactcaaaacacagataaagaaacctaatcaccagtgacatttatctatctatctattcattctaaggaaagtcttccactaattacat |
110 |
Q |
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| T |
6392944 |
cacagaaacataactcaaaacacagataaagaaacctaatcaccagtgacatttatctatctatctatccattctaaggaaagtcttccactaattacat |
6392845 |
T |
|
| Q |
111 |
gtaaagcaatttaacacctttattttctgttacttttccccaaatcagtggcgcaattttccactaatgactagttattatgattatgatacttaaaatt |
210 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6392844 |
gtaaagcaatttaacacctttattttctgttaaatttccccaaatcagtggcgcaattttccactaatgactagttattatgattatgatacttaaaatt |
6392745 |
T |
|
| Q |
211 |
aaaaacacagatatgtatgtgaacaagttaagacctcatttgatataagctaaaactaattttgagaag |
279 |
Q |
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|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6392744 |
aaaaacacagatatgtatgtgaacaagttaagacctgatttgatataagctaaaactaattttgagaag |
6392676 |
T |
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