View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0572_low_19 (Length: 304)
Name: NF0572_low_19
Description: NF0572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0572_low_19 |
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| [»] scaffold0042 (1 HSPs) |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 27 - 287
Target Start/End: Complemental strand, 34300 - 34041
Alignment:
| Q |
27 |
tcatttgtatcgttgcgaagacatattccactacctaccttattaagtgatgcggagaatggggcatcaatgttacatttgtacctacctcgtgtcggtt |
126 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34300 |
tcatttgtatcgttgcgaagacatattccaatacctaccttattaagtgatgcggagaatggggcatcaatgttacatttgtacctacctcgtgccggtt |
34201 |
T |
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| Q |
127 |
ttgtccactccaccacttctctgctgctagtaccactttgtggaaaaaaggtacttgtttttcctttgagattcaatacattgtgcagctcgccagttct |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34200 |
ttgtccactccaccacttctctgctgctagtaccactttgtggaaaaagggtacttgttttt-ctttgagattcaatacattgtgcagctcgccagttct |
34102 |
T |
|
| Q |
227 |
caaggagatgggttgcacactccacaacctgtatgctcgtctcattttgttactgccacag |
287 |
Q |
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| T |
34101 |
caaggagatgggttgcacactccacaacctgcatgctcgtctcattttgttattgccacag |
34041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 32 - 287
Target Start/End: Original strand, 12715185 - 12715438
Alignment:
| Q |
32 |
tgtatcgttgcgaagacatattccactacctaccttattaagtgatgcggagaatggggcatcaatgttacatttgtacctacctcgtgtcggttttgtc |
131 |
Q |
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|||||| |||||||||||||||||| |||| ||| | || || |||| ||| |||| ||||||||| |||||||||||||| || |||| |||| || |
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| T |
12715185 |
tgtatcattgcgaagacatattccaatacccaccatgtttagggatgaggaaaatgaggcatcaatattacatttgtacctgccacgtgcaagtttcgtt |
12715284 |
T |
|
| Q |
132 |
cactccaccacttctctgctgctagtaccactttgtggaaaaaaggtacttgtttttcctttgagattcaatacattgtgcagctcgccagttctcaagg |
231 |
Q |
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| T |
12715285 |
cattccaccacatcgctgctactaggacca-tttgttgaatataggagtttgttgtt-ctttgagatttaatacattgtgatgctcaccaatcctctagg |
12715382 |
T |
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| Q |
232 |
agatgggttgcacactccacaacctgtatgctcgtctcattttgttactgccacag |
287 |
Q |
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| T |
12715383 |
agatgtgttccacgctcgacaacctgcatgctcgtcacattttgttgctgccacag |
12715438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 32 - 287
Target Start/End: Original strand, 12776416 - 12776669
Alignment:
| Q |
32 |
tgtatcgttgcgaagacatattccactacctaccttattaagtgatgcggagaatggggcatcaatgttacatttgtacctacctcgtgtcggttttgtc |
131 |
Q |
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|||||| |||||||||||||||||| |||| ||| | || || |||| ||| |||| ||||||||| |||||||||||||| || |||| |||| || |
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| T |
12776416 |
tgtatcattgcgaagacatattccaatacccaccatgtttagggatgaggaaaatgaggcatcaatattacatttgtacctgccacgtgcaagtttcgtt |
12776515 |
T |
|
| Q |
132 |
cactccaccacttctctgctgctagtaccactttgtggaaaaaaggtacttgtttttcctttgagattcaatacattgtgcagctcgccagttctcaagg |
231 |
Q |
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|| |||||||| || ||||| |||| |||| ||||| ||| | ||| ||||| || |||||||||| ||||||||||| |||| ||| | ||| ||| |
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| T |
12776516 |
cattccaccacatcgctgctactaggacca-tttgttgaatataggagtttgttgtt-ctttgagatttaatacattgtgatgctcaccaatcctctagg |
12776613 |
T |
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| Q |
232 |
agatgggttgcacactccacaacctgtatgctcgtctcattttgttactgccacag |
287 |
Q |
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| T |
12776614 |
agatgtgttccacgctcgacaacctgcatgctcgtcacattttgttgctgccacag |
12776669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 24535679 - 24535741
Alignment:
| Q |
82 |
agaatggggcatcaatgttacatttgtacctacctcgtgtcggttttgtccactccaccactt |
144 |
Q |
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|||||| ||||||||||||||||||||| |||||||||| || |||| ||||||||||||||| |
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| T |
24535679 |
agaatgaggcatcaatgttacatttgtatctacctcgtgccgattttatccactccaccactt |
24535741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 91 - 286
Target Start/End: Complemental strand, 89023 - 88829
Alignment:
| Q |
91 |
catcaatgttacatttgtacctacctcgtgtcggttttgtccactccaccacttctctgctgctagtaccactttgtggaaaaaaggtacttgtttttcc |
190 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||| | || ||| ||||| | || ||| |||| || | |
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| T |
89023 |
catcaatgttacatttgtacctacctcgtgttggttttgtccaccccaccacttatctgctattggtgccatcttgtgacgtagagatacatgttatt-c |
88925 |
T |
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| Q |
191 |
tttgagattcaatacattgtgcagctcgccagttctcaaggagatgggttgcacactccacaacctgtatgctcgtctcattttgttactgccaca |
286 |
Q |
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||||||| |||| |||||||||||||| |||||||||||||||||||||| ||| |||||||| | |||||||||||||||| ||||||| |
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| T |
88924 |
tttgagaccgaatatgttgtgcagctcgccgtttctcaaggagatgggttgcacgctcaacaacctgcctactcgtctcattttgttgttgccaca |
88829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 35 - 149
Target Start/End: Original strand, 39648698 - 39648812
Alignment:
| Q |
35 |
atcgttgcgaagacatattccactacctaccttattaagtgatgcggagaatggggcatcaatgttacatttgtacctacctcgtgtcggttttgtccac |
134 |
Q |
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|||||| ||||||||||||||| |||||||| |||| || | ||||||| ||||||||||||| ||||||||||| |||||| ||||||||| ||| |
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| T |
39648698 |
atcgtttcgaagacatattccaatacctaccatatttgaagaagatgagaatgaggcatcaatgttatatttgtacctatctcgtgccggttttgtgcac |
39648797 |
T |
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| Q |
135 |
tccaccacttctctg |
149 |
Q |
| |
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| T |
39648798 |
tcaaccacttctctg |
39648812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 276
Target Start/End: Original strand, 39649244 - 39649313
Alignment:
| Q |
207 |
ttgtgcagctcgccagttctcaaggagatgggttgcacactccacaacctgtatgctcgtctcattttgt |
276 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||| || ||| ||| |||| | |||| |||||||||| |
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| T |
39649244 |
ttgtgcagctcgccaatcctcaaggagatgggttggacgctcaacagcctgcctactcgactcattttgt |
39649313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 47796 - 47752
Alignment:
| Q |
103 |
atttgtacctacctcgtgtcggttttgtccactccaccacttctc |
147 |
Q |
| |
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|||| ||||||||||||| ||||||||||||||||| | |||||| |
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| T |
47796 |
atttatacctacctcgtgccggttttgtccactccagcgcttctc |
47752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 40902222 - 40902266
Alignment:
| Q |
103 |
atttgtacctacctcgtgtcggttttgtccactccaccacttctc |
147 |
Q |
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| T |
40902222 |
atttatacctacctcgtgccggttttgtccactccagcgcttctc |
40902266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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