View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0572_low_3 (Length: 526)
Name: NF0572_low_3
Description: NF0572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0572_low_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 101 - 526
Target Start/End: Complemental strand, 22365229 - 22364804
Alignment:
| Q |
101 |
caccatatccataattccatttgttgctgagtttgcgacatgcttcaattgtgtgtgtttcgttttctttttagtgtggcttttacattcttacaatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22365229 |
caccatatccataattccatttgttgctgagtttgcgacatgcttcaattgtgtgtgtttcgttttctttttagtgtggcttttacattcttacaatttt |
22365130 |
T |
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| Q |
201 |
tccttacgaactaagaacgagagctccacctttttggatatttctcaaagtatactatggtctatagtatcaaactattttcttgaccattgacattatc |
300 |
Q |
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| T |
22365129 |
tccttacgaactaagaatgagagctccacctttttggatatttctcaaagtatactatggtctatagtatcaaactattttcttgaccattgacattatc |
22365030 |
T |
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| Q |
301 |
aaagnnnnnnngccctttggtttagatatcattgtgttcatattttccatccctttatannnnnnnncaacgacatttttggacatagttcaaatatcac |
400 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
22365029 |
aaagtttttttgccctttggtttagatatcattgtgttcatattttccatccctttata-tttttttcaacgacatttttggacatagttcaaatatcac |
22364931 |
T |
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| Q |
401 |
a-tttttatgaccaaaccatgatattttcagttttagaagtttagaatagggatagggattgtgtttgtagttacactaatcaatttgaggaatgactct |
499 |
Q |
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| T |
22364930 |
attttttatgaccaaaccatgatattttcagttttggaagtttagaatagggatagggattgtgtttgtagttacactaatcaatttgaggaatgactct |
22364831 |
T |
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| Q |
500 |
tctttgtgcaatattttattctgaatt |
526 |
Q |
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| T |
22364830 |
tctttgtgcaatattttattttgaatt |
22364804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 5e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 245 - 399
Target Start/End: Complemental strand, 2788415 - 2788262
Alignment:
| Q |
245 |
tcaaagtatactatggtctatagtatcaaactattttcttgaccattgacattatcaaagnnnnnnngccctttggtttagatatcattgtgttcatatt |
344 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2788415 |
tcaaagtatactatggtctatagtatcaaactattttcttggccattgacattatcaaagttcttttgccctttggtttagatatcattgtgttcatatt |
2788316 |
T |
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| Q |
345 |
ttccatccctttatannnnnnnncaacgacatttttggacatagttcaaatatca |
399 |
Q |
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| T |
2788315 |
tttcatccctttata-tttttttcaacaacatttttggacatagttcaaatatca |
2788262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 101 - 184
Target Start/End: Complemental strand, 2788500 - 2788417
Alignment:
| Q |
101 |
caccatatccataattccatttgttgctgagtttgcgacatgcttcaattgtgtgtgtttcgttttctttttagtgtggctttt |
184 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2788500 |
caccatatccataattccagttgttgctgagtttgcgacatgcttcaattgtgtgtgtttcgttttcttttaagtgtggctttt |
2788417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 297
Target Start/End: Original strand, 9368764 - 9368793
Alignment:
| Q |
268 |
tatcaaactattttcttgaccattgacatt |
297 |
Q |
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| T |
9368764 |
tatcaaactattttcttgaccattgacatt |
9368793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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