View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0572_low_31 (Length: 231)
Name: NF0572_low_31
Description: NF0572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0572_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 62 - 153
Target Start/End: Original strand, 3077829 - 3077923
Alignment:
| Q |
62 |
aaaccctccacgaaagtgccaccaccttagacggagccggacttttccaaagttgggtaaacac---cttctcctccacactccaattgttctct |
153 |
Q |
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| T |
3077829 |
aaaccctccacgaaagtgccaccaccttagacggagccggacttttccaaagttgggtaaacaccctcttctcctctacactccaattgttctct |
3077923 |
T |
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Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 44692825 - 44692722
Alignment:
| Q |
13 |
agggcattcctcctactaagattaaaccgcgtcgggatacgatcaagcaaaaccctccacgaaagtgccaccaccttagacggagccggacttttccaaa |
112 |
Q |
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| T |
44692825 |
agggcattccttctacgaagattccaccgcgtcggaatacgatcaagcaaaactttccaagaaagggccaccacttttgacggagccgggcttttccaaa |
44692726 |
T |
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| Q |
113 |
gttg |
116 |
Q |
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|||| |
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| T |
44692725 |
gttg |
44692722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 113
Target Start/End: Complemental strand, 15316260 - 15316226
Alignment:
| Q |
79 |
gccaccaccttagacggagccggacttttccaaag |
113 |
Q |
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| T |
15316260 |
gccacaaccttagacggagccggacttttccaaag |
15316226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 152
Target Start/End: Original strand, 34866382 - 34866509
Alignment:
| Q |
28 |
ctaagattaaaccgcgtcgggatacgatcaagcaaaaccctccacgaaagtgccaccaccttagacggagccggacttttccaaagttgggtaaacac-- |
125 |
Q |
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| T |
34866382 |
ctaagattcaatcgcgacggaatacgatcaagcaagactttccaagaaagggccaccacttttgagggggccgggcttttccaaagttggagaaacactc |
34866481 |
T |
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| Q |
126 |
-cttctcctccacactccaattgttctc |
152 |
Q |
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| T |
34866482 |
tcaactcctccacactccaattgttctc |
34866509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 14248764 - 14248813
Alignment:
| Q |
68 |
tccacgaaagtgccaccaccttagacggagccggacttttccaaagttgg |
117 |
Q |
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| T |
14248764 |
tccaagaaagagccaccgccttagacggagccggactcttccaaatttgg |
14248813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 5008679 - 5008743
Alignment:
| Q |
58 |
agcaaaaccctccacgaaagtgccaccaccttagacggagccggacttttccaaagttgggtaaa |
122 |
Q |
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| T |
5008679 |
agcaaaaccttccaagagagtgccaccaccttcaaaggagccggattcttccaaagttgcgtaaa |
5008743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 122
Target Start/End: Original strand, 47337317 - 47337409
Alignment:
| Q |
30 |
aagattaaaccgcgtcgggatacgatcaagcaaaaccctccacgaaagtgccaccaccttagacggagccggacttttccaaagttgggtaaa |
122 |
Q |
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| T |
47337317 |
aagattcaaacgggtcggtatacgattaagcaaagatctccaagagagcgccaccaccttagaaggagccgggctcttccaaacttggctaaa |
47337409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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