View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0572_low_6 (Length: 468)
Name: NF0572_low_6
Description: NF0572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0572_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 30 - 463
Target Start/End: Complemental strand, 25334838 - 25334405
Alignment:
| Q |
30 |
ccaccatcctcaaaagaagaaagtgcaagcacttcttttgtgttgaatgcatatgcaagtatgtagaagttgaaatcaatgaaaatccacttaaagtgat |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25334838 |
ccaccatcctcaaaagaagaaagtgcaagcacttcttttgtgttgaatgcatatgcaagtatgtagaagttgaaatcaatgaaaatccacttaaagtgat |
25334739 |
T |
|
| Q |
130 |
gtgtccaagtccaaattgttgtgtgaaatataagccaaaacattttaatcacattttacctaaaaaggtttttgataaatgggagtatttaatttctgag |
229 |
Q |
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| T |
25334738 |
gtgtccaagtccaaattgttgtgtgaaatataatccaaaacattttaatcacattttacctaaaaaggtgtttgataaatgggagtatttaatttctgag |
25334639 |
T |
|
| Q |
230 |
ttttctattccctctgaggagaagacttattgcccgtttgagaattgttccgtcttgttggacaaagaagaccttattgaacgaggcatcgacaaatgtt |
329 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| || | | |||||||||| |
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| T |
25334638 |
ttttctattccctctgagaagaagacttattgcccgtttgagaattgttccgttttgttggacaaagaagatcttatcgaaaaagacgttgacaaatgtt |
25334539 |
T |
|
| Q |
330 |
cttctaagtgtccctcgtgtaatagacgcttttgcgcgaagtgcaaagttccatggcatggaggaatgagttgtgagagattccaagcaatcaaaaggaa |
429 |
Q |
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| T |
25334538 |
cttctaagtgtccttcgtgtcacagacgcttttgcgcgaagtgcaaagttccgtggcatggaggaatgagttgtgagagattccaagcaatcaaaaggag |
25334439 |
T |
|
| Q |
430 |
taacccaaatgatttggataccatattcttggag |
463 |
Q |
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| T |
25334438 |
taaccctaatgatttggataccatatttttggag |
25334405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 30 - 449
Target Start/End: Complemental strand, 25345910 - 25345494
Alignment:
| Q |
30 |
ccaccatcctcaaaagaagaaagtgcaagcacttcttttgtgttgaatgcatatgcaagtatgtagaagttgaaatcaatgaaaatccacttaaagtgat |
129 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||| ||||| |||||||||||||||||| |||| ||||| ||| | || || | |
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| T |
25345910 |
ccaccatcctcaaaagaagaaagtgcaatcacctcttttgtgttgactgcatttgcaagtatgtagaagttcaaattaatgataatgcttacaaggtttt |
25345811 |
T |
|
| Q |
130 |
gtgtccaagtccaaattgttgtgtgaaatataagccaaaacattttaatcacattttacctaaaaaggtttttgataaatgggagtatttaatttctgag |
229 |
Q |
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||| |||||||||||||||| ||||||||||||||| |||||||| || |||||||| |||||| | || ||| ||||||||||| |||| ||||||| |
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| T |
25345810 |
gtgcccaagtccaaattgttttgtgaaatataagccgaaacatttgaaacacattttgcctaaacaacttattgttaaatgggagtttttagcttctgag |
25345711 |
T |
|
| Q |
230 |
ttttctattccctctgaggagaagacttattgcccgtttgagaattgttccgtcttgttggacaaagaagaccttattgaacgaggcatcgacaaatgtt |
329 |
Q |
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| T |
25345710 |
ttatctaagccgtcagagccgaagacttactgcccttatgcgaattgttctgttttgttgggcaaagaaaatgatattggaagagaatttaaca---gca |
25345614 |
T |
|
| Q |
330 |
cttctaagtgtccctcgtgtaatagacgcttttgcgcgaagtgcaaagttccatggcatggaggaatgagttgtgagagattccaagcaatcaaaaggaa |
429 |
Q |
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||||| ||| || |||||| | |||| ||||| || |||||||||||||||||||||| |||||||| |||| ||| ||||||| | | |||||||| |
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| T |
25345613 |
gttctaggtgcccttcgtgtcacagacaattttgtgcaaagtgcaaagttccatggcatgcaggaatgaattgtcagaaattccaacaatttaaaaggaa |
25345514 |
T |
|
| Q |
430 |
taacccaaatgatttggata |
449 |
Q |
| |
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| || |||||||||||||| |
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| T |
25345513 |
tgacaaaaatgatttggata |
25345494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 25339769 - 25339690
Alignment:
| Q |
32 |
accatcctcaaaagaagaaagtgcaagcacttcttttgtgttgaatgcatatgcaagtatgtagaagttgaaatcaatga |
111 |
Q |
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| T |
25339769 |
accatcttcaaaataagaatgtgcaagcacctcttttgtgttgactgcatttgcaagtatgtagaagttcaaattaatga |
25339690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 193
Target Start/End: Complemental strand, 21788187 - 21788125
Alignment:
| Q |
131 |
tgtccaagtccaaattgttgtgtgaaatataagccaaaacattttaatcacattttacctaaa |
193 |
Q |
| |
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||||||||||||||||||| |||||||| ||||||||||| || | ||||||||||||||| |
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| T |
21788187 |
tgtccaagtccaaattgttctgtgaaattgaagccaaaacaattgcaacacattttacctaaa |
21788125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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