View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0572_low_7 (Length: 439)
Name: NF0572_low_7
Description: NF0572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0572_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 30 - 434
Target Start/End: Original strand, 32036196 - 32036600
Alignment:
| Q |
30 |
agaaggagctgttgtggtggtgattgtagcagctgcagcaactgcgcgacaacgagcaagacgttccttagcaatggccaaatcatgctgaagttccatc |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32036196 |
agaaggagctgttgtggtggtgattgtagcagctgcagcaactgcgcgacaacgagcaagacgttccttagcaatggccaaatcatgctgaagttccatc |
32036295 |
T |
|
| Q |
130 |
atcttcctttgcaacatagctatggaaccaatgcatccataaactgggtctctaagccttgcttcagcttcataagcaagagaattcactgtgtcttctc |
229 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32036296 |
atcttcctttgcaacatagctatggaaccaatgcatccgtaaactgggtctctaagccttgcttcagcttcataagcaagagaattcactgtgtcttctc |
32036395 |
T |
|
| Q |
230 |
tttgtttttctggcacttcaatgagtatcttgctaacattgcttgctccaaatactttgtgaactttggcgaatttcttgcactcattagaatggaagta |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32036396 |
tttgtttttctggcacttcaatgagtatcttgctaacattgcttgctccaaatactttgtgaactttggcgaatttcttgcactcattagaatggaagta |
32036495 |
T |
|
| Q |
330 |
aggtgcaaataagcaatctggtgtgcatcttcttttcaataatttgcaagctgcacaagatgagcttgaacgtggctcataaccctttatgcctttcatc |
429 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32036496 |
aggtgcaaataagcaatctggtgtgcatcttcttttcaataatttgcaagctgcacaagatgagcttgaacgtggctcataaccctttatgcctttcatt |
32036595 |
T |
|
| Q |
430 |
tcact |
434 |
Q |
| |
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||||| |
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|
| T |
32036596 |
tcact |
32036600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 79 - 416
Target Start/End: Original strand, 35808612 - 35808949
Alignment:
| Q |
79 |
caacgagcaagacgttccttagcaatggccaaatcatgctgaagttccatcatcttcctttgcaacatagctatggaaccaatgcatccataaactgggt |
178 |
Q |
| |
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|||||||| || || ||||| |||||||| | |||||| |||||||| | ||||||||||||||| | ||||| | ||| ||||||||||| || |||| |
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| T |
35808612 |
caacgagccaggcgatcctttgcaatggcaagatcatgttgaagttcaaccatcttcctttgcaaaagtgctatagcacctatgcatccatagacagggt |
35808711 |
T |
|
| Q |
179 |
ctctaagccttgcttcagcttcataagcaagagaattcactgtgtcttctctttgtttttctggcacttcaatgagtatcttgctaacattgcttgctcc |
278 |
Q |
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||||||||||||| |||||||||||||| | ||||||||| || ||||| ||||||| ||||| |||||||| || |||||||| |||||||||||||| |
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| T |
35808712 |
ctctaagccttgcatcagcttcataagccaaagaattcacagtttcttccctttgttcctctggaacttcaatcagaatcttgctcacattgcttgctcc |
35808811 |
T |
|
| Q |
279 |
aaatactttgtgaactttggcgaatttcttgcactcattagaatggaagtaaggtgcaaataagcaatctggtgtgcatcttcttttcaataatttgcaa |
378 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||| || | ||||| || ||||||| |||| |||| ||||||||||||||| |||||||| |
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| T |
35808812 |
aaatactttgtgaactttcgcgaatttcttgcactcatcggagcgaaagtatggcgcaaatatacaatttggtatgcatcttcttttcagaaatttgcag |
35808911 |
T |
|
| Q |
379 |
gctgcacaagatgagcttgaacgtggctcataaccctt |
416 |
Q |
| |
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||||||||||| || ||||| | ||| ||||||||||| |
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| T |
35808912 |
gctgcacaagaggaacttgaccttggttcataaccctt |
35808949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 186 - 293
Target Start/End: Complemental strand, 600908 - 600801
Alignment:
| Q |
186 |
ccttgcttcagcttcataagcaagagaattcactgtgtcttctctttgtttttctggcacttcaatgagtatcttgctaacattgcttgctccaaatact |
285 |
Q |
| |
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||||||||||||||||||||| |||||||||||||| ||||||||||| | | |||||| | || || ||||||||||||||||| ||||||| | |
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| T |
600908 |
ccttgcttcagcttcataagctagagaattcactgtatcttctctttgatgaggtaagacttcatttagaattttgctaacattgcttgcaccaaatatt |
600809 |
T |
|
| Q |
286 |
ttgtgaac |
293 |
Q |
| |
|
|||||||| |
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|
| T |
600808 |
ttgtgaac |
600801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 591351 - 591284
Alignment:
| Q |
166 |
ccataaactgggtctctaagccttgcttcagcttcataagcaagagaattcactgtgtcttctctttg |
233 |
Q |
| |
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||||| ||||| ||| ||| ||||||||||||||||||||| ||||||||||| || ||||||||||| |
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|
| T |
591351 |
ccatacactggatctttaatccttgcttcagcttcataagctagagaattcaccgtatcttctctttg |
591284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 166 - 293
Target Start/End: Original strand, 12360671 - 12360798
Alignment:
| Q |
166 |
ccataaactgggtctctaagccttgcttcagcttcataagcaagagaattcactgtgtcttctctttgtttttctggcacttcaatgagtatcttgctaa |
265 |
Q |
| |
|
||||||||||| ||| | | |||||| |||||||||||||||||||| ||||||| ||||| ||||| | | | |||||||| | || | || || | |
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|
| T |
12360671 |
ccataaactggatcttttatccttgcctcagcttcataagcaagagagttcactgcatcttccctttgatgtggttgcacttcattcagaagtttactta |
12360770 |
T |
|
| Q |
266 |
cattgcttgctccaaatactttgtgaac |
293 |
Q |
| |
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|||||||||| ||||||| ||||||||| |
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|
| T |
12360771 |
cattgcttgcaccaaatattttgtgaac |
12360798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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