View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0572_low_8 (Length: 436)
Name: NF0572_low_8
Description: NF0572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0572_low_8 |
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| [»] scaffold0302 (1 HSPs) |
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Alignment Details
Target: scaffold0302 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: scaffold0302
Description:
Target: scaffold0302; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 30 - 426
Target Start/End: Original strand, 20232 - 20628
Alignment:
| Q |
30 |
tcttgagcaacaaaatgtaaaaacatgcaaagtttgatggatgtggtctttgttaatttaaacaatggagcgaatcaaataaccgactcgttagttaaag |
129 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||| |||| |
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| T |
20232 |
tcttgagcaacaaaatgtaaaaacatgcagagtttgatggatgtggtctttgttaatttaaacaaggaagctaatcaaataaccgactcgttagtaaaag |
20331 |
T |
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| Q |
130 |
taggattacgaactgatggcaatagaatatctaggtttcaatgtggataatgcaggtctgccgagttctgttttattttgtacctgttgcactatttttg |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
20332 |
taggattacgaactgatggcaatagaatatctaggtttcaatgtggataatgcaggtctgccgagttctgttttattttgtacctgttgcgctatttttg |
20431 |
T |
|
| Q |
230 |
tgtgcttcgtgttgctgttgggtgtgtttttagtgtgctgaggatttttccttctggtggtcctatgcagtttgctggaagcagcatagttggagttgat |
329 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| || | |||||||||||||||| |
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| T |
20432 |
tgtgcttcgtgttgttgttgggtgtgtttttagtgtgctggggatttttccttctggtggtcctatacagtttgctggcagtaacatagttggagttgat |
20531 |
T |
|
| Q |
330 |
agtttgtcatctgtcatgtgttatattctttaggtagtgatcttgtgtgttcttaggttatgagtgttttttctttcaattgtttgggatgtctgtg |
426 |
Q |
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| T |
20532 |
attttgtgatctgtcatgtgttattgtatttaggtagtgatcttgtgtcttcttaggttatgagtgttttttctttcaattgtttgggatgtgtgtg |
20628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 123; Significance: 5e-63; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 30 - 353
Target Start/End: Complemental strand, 1236669 - 1236350
Alignment:
| Q |
30 |
tcttgagcaacaaaatgtaaaaacatgcaaagtttgatggatgtggtctttgttaatttaaacaatggagcgaatcaaataaccgactcgttagttaaag |
129 |
Q |
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||||||||||||||||| ||||||||| | |||||||||||||||| ||||||| || |||| || | ||| ||||||||| |||||| |||| | || | |
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| T |
1236669 |
tcttgagcaacaaaatgaaaaaacatgtagagtttgatggatgtgggctttgttcatataaaaaaggaagccaatcaaatagccgacttgttaataaatg |
1236570 |
T |
|
| Q |
130 |
taggattacgaactgatggcaatagaatatctaggtttcaatgtggataatgcaggtctgccgagttctgttttattttgtacctgttgcactatttttg |
229 |
Q |
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| T |
1236569 |
aaggatcacagatggatgacaattgaatatctaggttttgatgtagataatgcaggtctgcaaagttctgtttt----tgtagctgttgcactctttttg |
1236474 |
T |
|
| Q |
230 |
tgtgcttcgtgttgctgttgggtgtgtttttagtgtgctgaggatttttccttctggtggtcctatgcagtttgctggaagcagcatagttggagttgat |
329 |
Q |
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| |||| ||||||||||||||||||||||||||||| | ||| |||||||||||| |||||||||||||||||||| |||||||| |||| |||||| |
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| T |
1236473 |
cgagctttgtgttgctgttgggtgtgtttttagtgtgtcggggagttttccttctggcggtcctatgcagtttgctggttgcagcatatttggtgttgat |
1236374 |
T |
|
| Q |
330 |
agtttgtcatctgtcatgtgttat |
353 |
Q |
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| T |
1236373 |
attttgtcgtcgatcatgtgttat |
1236350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 224 - 350
Target Start/End: Original strand, 1183239 - 1183364
Alignment:
| Q |
224 |
tttttgtgtgcttcgtgttgctgttgggtgtgtttttagtgtgctgaggatttttccttctggtggtcctatgcagtttgctggaagcagcatagttgga |
323 |
Q |
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|||||| | ||||| ||||||||||| |||||||||||||| | ||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1183239 |
tttttgcgcgcttcatgttgctgttgaatgtgtttttagtgtcgag-ggagttttccttctggtggtcctatgcagtttgctggctgcagcatagttggg |
1183337 |
T |
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| Q |
324 |
gttgatagtttgtcatctgtcatgtgt |
350 |
Q |
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| T |
1183338 |
gttgatatttttgcatctgtcatgtgt |
1183364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 271 - 351
Target Start/End: Original strand, 1194127 - 1194207
Alignment:
| Q |
271 |
ggatttttccttctggtggtcctatgcagtttgctggaagcagcatagttggagttgatagtttgtcatctgtcatgtgtt |
351 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||| ||||||||||||||| |
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| T |
1194127 |
ggatttttccttctggtggtcctatgcagtttgctggctgcagcatagttggtgttgatatttttgcatctgtcatgtgtt |
1194207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 30 - 203
Target Start/End: Original strand, 1183071 - 1183242
Alignment:
| Q |
30 |
tcttgagcaacaaaatgtaaaaacatgcaaagtttgatggatgtggtctttgttaatttaaacaatggagcgaatcaaataaccgactcgttagttaaag |
129 |
Q |
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||||||||||||||||| ||||| |||| |||||| ||||| ||| ||||||| || |||| | | ||| |||||||||||||||| ||||| | || |
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| T |
1183071 |
tcttgagcaacaaaatgaaaaaa--tgcagagtttggtggatatgggctttgttcatataaatagggaagctaatcaaataaccgactagttagcaatag |
1183168 |
T |
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| Q |
130 |
taggattacgaactgatggcaatagaatatctaggtttcaatgtggataatgcaggtctgccgagttctgtttt |
203 |
Q |
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|||| | | ||| |||||||||||||||||||||||| || | ||||||| |||||||| ||||||||||| |
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| T |
1183169 |
tagggtcataaacggatggcaatagaatatctaggttttgatatagataatgtaggtctgctaagttctgtttt |
1183242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 416
Target Start/End: Original strand, 897220 - 897273
Alignment:
| Q |
362 |
ggtagtgatcttgtgtgttcttaggttatgagtgttttttctttcaattgtttgg |
416 |
Q |
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||||||| ||| ||||||| |||||| ||||||| |||||||||||||||||||| |
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| T |
897220 |
ggtagtgctctggtgtgttattaggtgatgagtg-tttttctttcaattgtttgg |
897273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 416
Target Start/End: Original strand, 1182533 - 1182584
Alignment:
| Q |
364 |
tagtgatcttgtgtgttcttaggttatgagtgttttttctttcaattgtttgg |
416 |
Q |
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||||| ||| ||||||| |||||| ||||||| |||||||||||||||||||| |
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| T |
1182533 |
tagtgttctggtgtgttattaggtaatgagtg-tttttctttcaattgtttgg |
1182584 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 257 - 426
Target Start/End: Original strand, 12857370 - 12857539
Alignment:
| Q |
257 |
ttttagtgtgctgaggatttttccttctggtggtcctatgcagtttgctggaagcagcatagttggagttgatagtttgtcatctgtcatgtgttatatt |
356 |
Q |
| |
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||||||||||||| |||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||| |||||||| ||||||||||||| | |
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| T |
12857370 |
ttttagtgtgctggggatttttccttctagtggtcctatgcaatttgctgacagcagcatagttggagttgatattttgtcatatgtcatgtgttattat |
12857469 |
T |
|
| Q |
357 |
ctttaggtagtgatcttgtgtgttcttaggttatgagtgttttttctttcaattgtttgggatgtctgtg |
426 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
12857470 |
atttaggtagtgatcttgtgtgttcttaggttatgagtgtcttttctttcaattgtttgggatgtgtgtg |
12857539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 292 - 426
Target Start/End: Complemental strand, 20256510 - 20256376
Alignment:
| Q |
292 |
ctatgcagtttgctggaagcagcatagttggagttgatagtttgtcatctgtcatgtgttatattctttaggtagtgatcttgtgtgttcttaggttatg |
391 |
Q |
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|||||||||||| ||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
20256510 |
ctatgcagtttgttggctgcaacatagttggagttgatattttgtcatctgtcatgtgttattgtctttaggtagtgattttgtgtgttcttaggttatg |
20256411 |
T |
|
| Q |
392 |
agtgttttttctttcaattgtttgggatgtctgtg |
426 |
Q |
| |
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||||||||||||||||||||||||| |||| |||| |
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| T |
20256410 |
agtgttttttctttcaattgtttggtatgtgtgtg |
20256376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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