View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0572_low_9 (Length: 424)
Name: NF0572_low_9
Description: NF0572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0572_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 30 - 405
Target Start/End: Complemental strand, 52580538 - 52580163
Alignment:
| Q |
30 |
ggtggattgatgaaacttcgaggtgatgtagaaatgtgcggttacagagatgtggagttgatgtggaacatgttaggcttaaacctcaagcctgaggcag |
129 |
Q |
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| T |
52580538 |
ggtggattgatgaaacttcgaggtgatgtagaaatgtgcggttacagagatgtggagttgatgtggaacatgttaggcttaaacctcaagcctgaggcag |
52580439 |
T |
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| Q |
130 |
tggaaactccacgaagcactaagccaaaacttacaaggcgtagctgcaagcaaagattcaattctaagcttttcttttggactaaccaataataaacttg |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52580438 |
tggaaactccacgaagcactaagccaaaacttacaaggcgtagctgcaagcaaagattcaattctaagcttttcttttggactaaccaataataaacttg |
52580339 |
T |
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| Q |
230 |
tgcctcaaatagtaaattttgaaagttttgtagtgggcacaatgtttattttgtacatgatgatataatcataatgaattttataaacttatgtaaatac |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52580338 |
tgcctcaaatagtaaattttgaaagttttgtagtgggcacaatgtttattttgtacatgatgatataatcataatgaattttataaacttatgtaaatac |
52580239 |
T |
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| Q |
330 |
aatttatacaagtaactgttaatttgtctctctatacattatacagataatcgaaagaaacgtcttcttgtttcat |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52580238 |
aatttatacaagtaactgttaatttgtctctctatacattatacagataatcgaaagaaacgtcttcttgtttcat |
52580163 |
T |
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