View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0573_high_9 (Length: 288)
Name: NF0573_high_9
Description: NF0573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0573_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 30 - 283
Target Start/End: Complemental strand, 39815215 - 39814978
Alignment:
| Q |
30 |
aatttattacaaatacatgcattgcaattagctgcagtcatttcctaaagataaggagggtgcaaaataaaaagctaattaatcgagaatgattacttct |
129 |
Q |
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| T |
39815215 |
aatttattacaaatacatgcattacaattagctgcagtcatt-cctaaagataaggagagtgcaaaataaaaagctaattaatcgagaatgataacttct |
39815117 |
T |
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| Q |
130 |
ccttcttcccaatccctgttaagatatttatcctcattcaaaatgtcactcccataatctcatcctttagaaccaacgccacaaatttcttcaataaaca |
229 |
Q |
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| T |
39815116 |
ccttcttc---------------atatttatcctcattcaaaatgtcactcccataatctcatcctttagaaccaacgccacagatttcttcaataaaca |
39815032 |
T |
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| Q |
230 |
acaccattcgttttatgctttgtattatcaatttagcagcttccctttgcttct |
283 |
Q |
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| T |
39815031 |
acaccattcgttttatgctttgtatcatcaatttagcagcttccctttgtttct |
39814978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 9039079 - 9038960
Alignment:
| Q |
96 |
ataaaaagctaattaatcgagaatgattacttctccttcttcccaatccctgttaagatatttatcctcattcaaaa-tgtcactcccataatctcatcc |
194 |
Q |
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| T |
9039079 |
ataaaaaactaattaatcgagaatgataatttctccttcttcccaattc-tgttaagaaatttctcctcgttcaaatctgtcactcccataatctcatcc |
9038981 |
T |
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| Q |
195 |
tttagaaccaacgccacaaat |
215 |
Q |
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|||| ||||||| |||||||| |
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| T |
9038980 |
tttaaaaccaaccccacaaat |
9038960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 96 - 224
Target Start/End: Original strand, 9123251 - 9123380
Alignment:
| Q |
96 |
ataaaaagctaattaatcgagaatgattacttctccttcttcccaatccctgttaagatatttatcctcattcaaa-atgtcactcccataatctcatcc |
194 |
Q |
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| T |
9123251 |
ataaaaagctaattaatcgagaatgataatttctccttcttcccaatctctgttaagaaatttctcctcattcaaatctgtaactcccataatatcatcc |
9123350 |
T |
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| Q |
195 |
tttagaaccaacgccacaaatttcttcaat |
224 |
Q |
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|||||||||||| | |||||| |||||||| |
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| T |
9123351 |
tttagaaccaaccctacaaatgtcttcaat |
9123380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 96 - 224
Target Start/End: Original strand, 9131358 - 9131487
Alignment:
| Q |
96 |
ataaaaagctaattaatcgagaatgattacttctccttcttcccaatccctgttaagatatttatcctcattcaaa-atgtcactcccataatctcatcc |
194 |
Q |
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||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||| |||| |||||||||||| ||| ||||||||||| |||||| |
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| T |
9131358 |
ataaaaagctaattaatcgagaatgataatttctccttcttcccaatctctgttaagaaatttctcctcattcaaatctgtaactcccataatatcatcc |
9131457 |
T |
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| Q |
195 |
tttagaaccaacgccacaaatttcttcaat |
224 |
Q |
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|||||||||||| | |||||| |||||||| |
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| T |
9131458 |
tttagaaccaaccctacaaatgtcttcaat |
9131487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 283
Target Start/End: Original strand, 9123473 - 9123516
Alignment:
| Q |
240 |
ttttatgctttgtattatcaatttagcagcttccctttgcttct |
283 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
9123473 |
ttttatgctttgtatcatcaatttagcagcttccctttgtttct |
9123516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 283
Target Start/End: Original strand, 9131580 - 9131623
Alignment:
| Q |
240 |
ttttatgctttgtattatcaatttagcagcttccctttgcttct |
283 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
9131580 |
ttttatgctttgtatcatcaatttagcagcttccctttgtttct |
9131623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 96 - 224
Target Start/End: Original strand, 24525119 - 24525248
Alignment:
| Q |
96 |
ataaaaagctaattaatcgagaatgattacttctccttcttcccaatccctgttaagatatttatcctcattcaaa--atgtcactcccataatctcatc |
193 |
Q |
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||||||||||||||||||||||||||| | |||||| ||||||||||| ||||||||| | || |||||||||||| || ||||||||||||||||||| |
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| T |
24525119 |
ataaaaagctaattaatcgagaatgataatttctccatcttcccaatctctgttaagaaacttctcctcattcaaatcat-tcactcccataatctcatc |
24525217 |
T |
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| Q |
194 |
ctttagaaccaacgccacaaatttcttcaat |
224 |
Q |
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||||||||||||| | |||||| |||||||| |
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| T |
24525218 |
ctttagaaccaaccctacaaatgtcttcaat |
24525248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 240 - 283
Target Start/End: Original strand, 24525341 - 24525384
Alignment:
| Q |
240 |
ttttatgctttgtattatcaatttagcagcttccctttgcttct |
283 |
Q |
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||||||||||||||| ||||||||||||||||| ||||| |||| |
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| T |
24525341 |
ttttatgctttgtatcatcaatttagcagcttctctttgtttct |
24525384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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