View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0573_low_12 (Length: 285)
Name: NF0573_low_12
Description: NF0573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0573_low_12 |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 105 - 252
Target Start/End: Original strand, 5093936 - 5094083
Alignment:
| Q |
105 |
ttatccttaatatttaatttttgctaacaacgcaaccctaattccaaaacctaaccctaataaaaatggcgccatatcattacaatttgaaattcaaatc |
204 |
Q |
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| T |
5093936 |
ttatccttaatatttaatttttgctaacaacgcaaccctaattccaaaacctaaccctaataaaaatggcgccatatcattaaaatttgaaattcaaatc |
5094035 |
T |
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| Q |
205 |
tccctcccataccctaatgagtgattaagcaataatcactccaaaaca |
252 |
Q |
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| T |
5094036 |
tccctcaaataccctaatgagtaattaagcaataatcactccaaaaca |
5094083 |
T |
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Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 5090753 - 5090851
Alignment:
| Q |
1 |
ttgggtgtaaatgagcaattttaaaagtgagaagagtaatattgaataacatatgcaaatatgaaacccaagcccataacaacaaacacacatccttat |
99 |
Q |
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| T |
5090753 |
ttgggggtaaatgagcaattttaaaagtgagaagggtaatattgaataacatatgcaaatatgaagcccaagcccataacaacaaacaaacatccttat |
5090851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 7138359 - 7138448
Alignment:
| Q |
4 |
ggtgtaaatgagcaattttaaaagtgagaagagtaatattgaataacatatgcaaatatgaaacccaagcccataacaacaaacacacat |
93 |
Q |
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| T |
7138359 |
ggtgtaaatgagcaattttaaaagtgagaagattaattttaaataacatatgcaaatataaggcccaagcccataacaacaaacacacat |
7138448 |
T |
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Target: chr6 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 26442939 - 26442850
Alignment:
| Q |
4 |
ggtgtaaatgagcaattttaaaagtgagaagagtaatattgaataacatatgcaaatatgaaacccaagcccataacaacaaacacacat |
93 |
Q |
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| T |
26442939 |
ggtgtaaatgagcaattttaaaagtgagaagattaattttaaataacatatgcaaatataaggcccaagcccacaacaacaaacacacat |
26442850 |
T |
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Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 41881046 - 41881137
Alignment:
| Q |
1 |
ttgggtgtaaatgagcaattttaaaagtgagaagagtaatattgaataacatatgcaaatatgaaacccaagcccataacaacaaacacacat |
93 |
Q |
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| T |
41881046 |
ttgggtgtaaatgagcaattttaaaagtgagaagattaattttaaataacatgtgcagatat-aaggccaagcccataacaacaaacacacat |
41881137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 28211587 - 28211522
Alignment:
| Q |
99 |
ttatccttatccttaatatttaatttttgctaacaacgcaaccctaattcca-aaacctaacccta |
163 |
Q |
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| T |
28211587 |
ttatccttatccttattatttaatctttcttaacattgcaaccctaattccataatcctaacccta |
28211522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 42826722 - 42826754
Alignment:
| Q |
10 |
aatgagcaattttaaaagtgagaagagtaatat |
42 |
Q |
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| T |
42826722 |
aatgagcaattttataagtgagaagagtaatat |
42826754 |
T |
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Target: scaffold0103 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 13134 - 13102
Alignment:
| Q |
4 |
ggtgtaaatgagcaattttaaaagtgagaagag |
36 |
Q |
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| T |
13134 |
ggtgtaaataagcaattttaaaagtgagaagag |
13102 |
T |
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