View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0573_low_13 (Length: 285)

Name: NF0573_low_13
Description: NF0573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0573_low_13
NF0573_low_13
[»] chr7 (2 HSPs)
chr7 (1-263)||(5090516-5090777)
chr7 (1-173)||(7138205-7138380)
[»] chr8 (1 HSPs)
chr8 (1-173)||(41880895-41881070)
[»] chr6 (4 HSPs)
chr6 (1-128)||(26442918-26443044)
chr6 (106-173)||(30710584-30710651)
chr6 (109-152)||(17304305-17304349)
chr6 (109-170)||(8064307-8064369)
[»] chr3 (2 HSPs)
chr3 (2-76)||(53223550-53223623)
chr3 (217-258)||(39915223-39915264)
[»] chr5 (1 HSPs)
chr5 (106-153)||(19577352-19577399)
[»] chr2 (1 HSPs)
chr2 (109-177)||(1377736-1377805)


Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 5090777 - 5090516
Alignment:
Q  1 tttaaaattgctcatttacacccaaaaatttaccctaataacccaaatgcaagttaattgtcgctcgctataaacggcagctaactcgcgctcggttcct 100  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  5090777 tttaaaattgctcatttacccccaaaa-tttaccctaataacccaaatgcaagttaattgtcgctcgctacaaacggaagctaactcgcgctcggttcct 5090679  T
Q  101 atgcttacgttttatttaattatttgacataaaattgtgcctcaccgatattgtgggttcatatccgcccctgattggctatctaattttagtatataca 200  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||||| || || ||| ||||||||||||||| |||||||||||||||| |    
T  5090678 atgcttacgttttatttgattatttgacataaaattgtgcctcaccaatattgtgagtccagatctgcccctgattggctagctaattttagtatatata 5090579  T
Q  201 tgaattcaatcgacattttgacttacatgttattgagacatctcctaaagagcttcaaaatct 263  Q
    ||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  5090578 tgaattcaatcgatattttgacttagatgttactgagacatctcctaaagagcttcaaaatct 5090516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 7138380 - 7138205
Alignment:
Q  1 tttaaaattgctcatttacacccaaaaatttaccctaataacccaaatgcaagttaattgtcgctcgctataaacggcagctaactcgcgctcggttcct 100  Q
    |||||||||||||||||||||| |||| |||| ||||||||||| ||||||||||||||||| ||||||| ||| ||||  ||||||  ||||||| | |    
T  7138380 tttaaaattgctcatttacacctaaaa-tttatcctaataaccccaatgcaagttaattgtcactcgctacaaatggcaattaactcaagctcggtactt 7138282  T
Q  101 atgcttacgttttatttaattatttgac----ataaaattgtgcctcaccgatattgtgggttcatatccgcccctg 173  Q
    |||  |||||||||||||||||||||||    | |||||||||||||||| ||||| || ||||| |||||||||||    
T  7138281 atgtgtacgttttatttaattatttgaccgcgaaaaaattgtgcctcaccaatattttgagttcagatccgcccctg 7138205  T

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Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 41881070 - 41880895
Alignment:
Q  1 tttaaaattgctcatttacacccaaaaatttaccctaataacccaaatgcaagttaattgtcgctcgctataaacggcagctaactcgcgctcggttcct 100  Q
    ||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||| || ||||||| ||| ||||  |||||| |||||||| | |    
T  41881070 tttaaaattgctcatttacacccaaaa-tttatcctaataaccccaatgcaagttaattatcactcgctacaaatggcaattaactcacgctcggtactt 41880972  T
Q  101 atgcttacgttttatttaattatttgac----ataaaattgtgcctcaccgatattgtgggttcatatccgcccctg 173  Q
    |||  ||  |||||||||||||||||||    | ||||||||| ||| || ||||| || ||||| |||||||||||    
T  41880971 atgtgtatattttatttaattatttgaccgcgaaaaaattgtgtctccccaatattttgagttcagatccgcccctg 41880895  T

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Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 26442918 - 26443044
Alignment:
Q  1 tttaaaattgctcatttacacccaaaaatttaccctaataacccaaatgcaagttaattgtcgctcgctataaacggcagctaactcgcgctcggttcct 100  Q
    |||||||||||||||||||||| ||||||||| ||||||||||| ||||||| ||||||||| ||||||| ||| | ||  |||||| |||||||| | |    
T  26442918 tttaaaattgctcatttacacc-aaaaatttatcctaataaccccaatgcaaattaattgtcactcgctacaaatgacaattaactcacgctcggtactt 26443016  T
Q  101 atgcttacgttttatttaattatttgac 128  Q
    |||  |||||||||||||||||||||||    
T  26443017 atgtgtacgttttatttaattatttgac 26443044  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 173
Target Start/End: Complemental strand, 30710651 - 30710584
Alignment:
Q  106 tacgttttatttaattatttgacataaaattgtgcctcaccgatattgtgggttcatatccgcccctg 173  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||||| || || || |||| ||||||    
T  30710651 tacgttttatttaattatttgacaagaaattatgcctcaccgatattttgagtccaaatccacccctg 30710584  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 152
Target Start/End: Complemental strand, 17304349 - 17304305
Alignment:
Q  109 gttttatttaattatttgacataaa-attgtgcctcaccgatatt 152  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||    
T  17304349 gttttatttaattatttgacaaaaacattgtgcctcaccgatatt 17304305  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 8064369 - 8064307
Alignment:
Q  109 gttttatttaattatttgacataaaa-ttgtgcctcaccgatattgtgggttcatatccgccc 170  Q
    ||||||||||||||||||||| |||| |||||||||| ||||||| || || || ||||||||    
T  8064369 gttttatttaattatttgacaaaaaatttgtgcctcatcgatattttgagtccagatccgccc 8064307  T

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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 53223550 - 53223623
Alignment:
Q  2 ttaaaattgctcatttacacccaaaaatttaccctaataacccaaatgcaagttaattgtcgctcgctataaacg 76  Q
    ||||||||| ||||||||||| ||||||||||||||||||||| | ||||||||||| |||||||||||||||||    
T  53223550 ttaaaattgatcatttacacc-aaaaatttaccctaataaccctagtgcaagttaatcgtcgctcgctataaacg 53223623  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 39915223 - 39915264
Alignment:
Q  217 tttgacttacatgttattgagacatctcctaaagagcttcaa 258  Q
    ||||| ||||||||||||||||| ||||||| ||||||||||    
T  39915223 tttgaattacatgttattgagacttctcctagagagcttcaa 39915264  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 153
Target Start/End: Original strand, 19577352 - 19577399
Alignment:
Q  106 tacgttttatttaattatttgacataaaattgtgcctcaccgatattg 153  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||    
T  19577352 tacgttttatttaattatttgacaaaaaattatgcctcaccgatattg 19577399  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 1377736 - 1377805
Alignment:
Q  109 gttttatttaattatttgac-ataaaattgtgcctcaccgatattgtgggttcatatccgcccctgattg 177  Q
    |||||||||||||||||||| | ||||||||| |||||| | |||||| || || ||||||| |||||||    
T  1377736 gttttatttaattatttgacaaaaaaattgtgtctcaccaacattgtgagtccagatccgcctctgattg 1377805  T

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