View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0573_low_14 (Length: 265)
Name: NF0573_low_14
Description: NF0573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0573_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 68 - 238
Target Start/End: Original strand, 20653205 - 20653375
Alignment:
| Q |
68 |
aaatatacaactactacacaatgagttggnnnnnnnncggttgcatcttcccaactaaaattgggcatacattatgaatacctgagtacgagcactgctt |
167 |
Q |
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| T |
20653205 |
aaatatacaactactacacaatgagttggaaaaaaaatggttgcatcttcccaactaaaattgggcatacattatgaatacctgagtacgagcactgctt |
20653304 |
T |
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| Q |
168 |
gtccatctcctccgattttcaatctcagcgtcatcaatgccataccaagaaggttctctagcagcaacagc |
238 |
Q |
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| T |
20653305 |
gtccatctcctccgattttcaatctcagcgtcatcaatgccataccaagaaggttctctagcagcaacagc |
20653375 |
T |
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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 228
Target Start/End: Original strand, 40553239 - 40553321
Alignment:
| Q |
146 |
tacctgagtacgagcactgcttgtccatctcctccgattttcaatctcagcgtcatcaatgccataccaagaaggttctctag |
228 |
Q |
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|||||| || |||||| |||| ||||| |||||||| ||||||||||| | ||||||||||||||||||||||| ||||||| |
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| T |
40553239 |
tacctgggtgcgagcattgctggtccacctcctccggttttcaatctccacttcatcaatgccataccaagaaggatctctag |
40553321 |
T |
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