View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0573_low_16 (Length: 254)
Name: NF0573_low_16
Description: NF0573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0573_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 29 - 231
Target Start/End: Original strand, 3429477 - 3429672
Alignment:
| Q |
29 |
ggtatagtcctcattttgtcttctttgtttttgtacaatttgttttagaaagaaaaaagaaactattttgttaggaagaggaagatttaggtgtagtaga |
128 |
Q |
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| T |
3429477 |
ggtatagtcctcattttgtcttctttgtttttgtacaatttgttttagaaagaaaaaagaaactattttgttaggaagaggaagatttaggtgtagtaga |
3429576 |
T |
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| Q |
129 |
agggaaaggaaagagggtgaaggatgtgagctttgaaagaagacatggggatgtaggtatttataatggccaacatccatgcagaggaagattattaact |
228 |
Q |
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| T |
3429577 |
agggaaaggaaagagggtgaagtatgtgagct-------aagacatggggatgtaggtatttataatggccaacatccatgcagaggaagattattaact |
3429669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 29 - 222
Target Start/End: Original strand, 3425998 - 3426193
Alignment:
| Q |
29 |
ggtatagtcctcattttgtcttcttt----gtttttgtacaatttgttttagaaagaaaaaagaaactattttgttaggaagaggaagatttaggtgtag |
124 |
Q |
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| T |
3425998 |
ggtatactcctcattttgtcttctttctttgtttttgtactattgattttaggaaggaaaaa---acgatttagttaggaagagagagatttaggtgtag |
3426094 |
T |
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| Q |
125 |
tagaagggaaaggaaagagggtgaaggatgtgagctt-tgaaagaagacatggggatgtaggtatttataatggccaacatccatgcagaggaagatta |
222 |
Q |
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| T |
3426095 |
tagaagggaaaggaaagagggtgaagggtgtaagcttgggaaagaagacatggggaggtaggtatttataatggccaacatccatgaagaagaagatta |
3426193 |
T |
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