View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0573_low_4 (Length: 385)

Name: NF0573_low_4
Description: NF0573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0573_low_4
NF0573_low_4
[»] chr5 (1 HSPs)
chr5 (20-291)||(35251389-35251663)


Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 291
Target Start/End: Complemental strand, 35251663 - 35251389
Alignment:
Q  20 caacaaaataacagaagcttgatcttggctgatttaacggtggagatcgcaagtaaccgaaacctctgttcaatccgacggttcaaccaacagctccctc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35251663 caacaaaataacagaagcttgatcttggctgatttaacggtggagatcgcaagtaaccgaaacctctgttcaatccgacggttcaaccaacagctccctc 35251564  T
Q  120 tcatcaccgccgctaataacaagaaaatctaaatnnnnnnn---ccaaaaccggttcggttcagtaacgaaccaagaaaaccttcatttcgaaccggagc 216  Q
    |||||||||||||||||||||| |||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35251563 tcatcaccgccgctaataacaacaaaatctaaataaaaaaaaaaccaaaaccggttcggttcagtaacgaaccaagaaaaccttcatttcgaaccggagc 35251464  T
Q  217 ttctgattagtttaagattttaacgtgtcttggatcatgaaaatggaagaggattcgtttgttttcgatggttaa 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35251463 ttctgattagtttaagattttaacgtgtcttggatcatgaaaatggaagaggattcgtttgttttcgatggttaa 35251389  T

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