View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0573_low_8 (Length: 334)

Name: NF0573_low_8
Description: NF0573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0573_low_8
NF0573_low_8
[»] chr3 (6 HSPs)
chr3 (6-273)||(4547915-4548182)
chr3 (6-246)||(3094786-3095026)
chr3 (6-246)||(3080349-3080589)
chr3 (36-167)||(3102353-3102484)
chr3 (33-167)||(3122478-3122612)
chr3 (66-174)||(1077316-1077424)
[»] chr8 (8 HSPs)
chr8 (35-184)||(15692659-15692808)
chr8 (11-241)||(15799785-15800015)
chr8 (35-194)||(15805364-15805523)
chr8 (11-241)||(15813167-15813397)
chr8 (36-238)||(15697281-15697483)
chr8 (11-194)||(15764383-15764566)
chr8 (33-199)||(15711988-15712154)
chr8 (85-199)||(15703699-15703813)
[»] chr2 (3 HSPs)
chr2 (66-175)||(2662479-2662588)
chr2 (45-172)||(2698501-2698628)
chr2 (66-166)||(2717106-2717206)
[»] chr5 (2 HSPs)
chr5 (111-175)||(27368659-27368723)
chr5 (66-124)||(487002-487060)
[»] chr4 (4 HSPs)
chr4 (64-172)||(31708193-31708301)
chr4 (64-125)||(31740589-31740650)
chr4 (84-172)||(14519920-14520008)
chr4 (143-175)||(47061874-47061906)
[»] chr1 (4 HSPs)
chr1 (111-175)||(6497782-6497846)
chr1 (111-175)||(47771006-47771070)
chr1 (111-176)||(6510735-6510800)
chr1 (99-175)||(6503116-6503192)
[»] scaffold0341 (2 HSPs)
scaffold0341 (111-176)||(12415-12480)
scaffold0341 (99-175)||(4795-4871)
[»] chr7 (2 HSPs)
chr7 (81-166)||(20263955-20264040)
chr7 (64-172)||(20294594-20294702)


Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 6 - 273
Target Start/End: Complemental strand, 4548182 - 4547915
Alignment:
Q  6 aaacttctagattggaagttaagactgaacattatcaatggaattgcaaaaggactcttgtatcttcatgaagactctagactaagagtaatccatagag 105  Q
    ||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4548182 aaacttctagattggaacttaagactaaacattattaatggaattgcaaaaggactcttgtatcttcatgaagactctagacttagagtaatccatagag 4548083  T
Q  106 acctaaaagcaagtaatgttctcttagatcaagagatgaatccaaaaatatctgattttggattggcaagggcatttgaaaaaggtcaaagtcaagaaaa 205  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4548082 acctaaaagcaagtaatgttcttttagatcaagagatgaatccaaaaatatctgattttggattggcaagggcatttgaaaaaggtcaaagtcaagaaaa 4547983  T
Q  206 cacaagaagagttgtgggcacatagtatgtgttatttttgtcaattctttcaatccaagatgtaatta 273  Q
    |||||||||| || ||||||||||||||||||||||||||||||| |||||||  |||||||||||||    
T  4547982 cacaagaagaattatgggcacatagtatgtgttatttttgtcaatcctttcaactcaagatgtaatta 4547915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 6 - 246
Target Start/End: Original strand, 3094786 - 3095026
Alignment:
Q  6 aaacttctagattggaagttaagactgaacattatcaatggaattgcaaaaggactcttgtatcttcatgaagactctagactaagagtaatccatagag 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3094786 aaacttctagattggaagttaagactgaacattatcaatggaattgcaaaaggactcttgtatcttcatgaagactctagactaagagtaatccatagag 3094885  T
Q  106 acctaaaagcaagtaatgttctcttagatcaagagatgaatccaaaaatatctgattttggattggcaagggcatttgaaaaaggtcaaagtcaagaaaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||    
T  3094886 acctaaaagcaagtaatgttctcttagatcaagagatgaatccaaaaatatctgattttggattggcaagggcatttgaaaaagaccaatgtcaagaaaa 3094985  T
Q  206 cacaagaagagttgtgggcacatagtatgtgttatttttgt 246  Q
    ||||||||||||||| |||||||||||||||||||| ||||    
T  3094986 cacaagaagagttgtcggcacatagtatgtgttattgttgt 3095026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 6 - 246
Target Start/End: Original strand, 3080349 - 3080589
Alignment:
Q  6 aaacttctagattggaagttaagactgaacattatcaatggaattgcaaaaggactcttgtatcttcatgaagactctagactaagagtaatccatagag 105  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||    
T  3080349 aaacttctggattggaagttaaggctgaacattatcaatggaattgcaaaaggactcttataccttcatgaagactctagacttagagtaatccatagag 3080448  T
Q  106 acctaaaagcaagtaatgttctcttagatcaagagatgaatccaaaaatatctgattttggattggcaagggcatttgaaaaaggtcaaagtcaagaaaa 205  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||    
T  3080449 acctaaaagcaagtaatgttctattagatcaagagatgaatccaaaaatatctgattttggattggcaagggcatttgaaaaagaccaatgtcaagaaaa 3080548  T
Q  206 cacaagaagagttgtgggcacatagtatgtgttatttttgt 246  Q
    ||||||||||||||| |||||||||||||||||||| ||||    
T  3080549 cacaagaagagttgtcggcacatagtatgtgttattgttgt 3080589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 167
Target Start/End: Original strand, 3102353 - 3102484
Alignment:
Q  36 attatcaatggaattgcaaaaggactcttgtatcttcatgaagactctagactaagagtaatccatagagacctaaaagcaagtaatgttctcttagatc 135  Q
    ||||| ||||| ||||| ||||| ||  | ||||||||||| |||||||| || ||||| || || |||||||| ||||| || ||| |||| |||||||    
T  3102353 attattaatgggattgctaaagggcttctatatcttcatgaggactctaggctcagagttattcacagagacctgaaagctagcaatattctattagatc 3102452  T
Q  136 aagagatgaatccaaaaatatctgattttgga 167  Q
    |||| |||||||||||||| || |||||||||    
T  3102453 aagaaatgaatccaaaaatctcagattttgga 3102484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 167
Target Start/End: Original strand, 3122478 - 3122612
Alignment:
Q  33 aacattatcaatggaattgcaaaaggactcttgtatcttcatgaagactctagactaagagtaatccatagagacctaaaagcaagtaatgttctcttag 132  Q
    |||||||| ||||| ||||| ||||| ||  | |||||||| || ||||||||||| || || || || |||||||| ||||| || ||| || | ||||    
T  3122478 aacattattaatgggattgctaaagggctactctatcttcacgaggactctagactcagggttattcacagagacctgaaagccagcaatattttgttag 3122577  T
Q  133 atcaagagatgaatccaaaaatatctgattttgga 167  Q
    |||| || |||||||||||||| || || ||||||    
T  3122578 atcatgaaatgaatccaaaaatttcagactttgga 3122612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 174
Target Start/End: Original strand, 1077316 - 1077424
Alignment:
Q  66 tatcttcatgaagactctagactaagagtaatccatagagacctaaaagcaagtaatgttctcttagatcaagagatgaatccaaaaatatctgattttg 165  Q
    ||||||||| |||| |||||| | ||  | || ||| |||| |||||| |||||||| || | |||||  | || ||||||||||||||||| |||||||    
T  1077316 tatcttcatcaagattctagattgaggatcatacatcgagatctaaaaccaagtaatattttattagacaatgatatgaatccaaaaatatcagattttg 1077415  T
Q  166 gattggcaa 174  Q
    | |||||||    
T  1077416 gcttggcaa 1077424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 35 - 184
Target Start/End: Complemental strand, 15692808 - 15692659
Alignment:
Q  35 cattatcaatggaattgcaaaaggactcttgtatcttcatgaagactctagactaagagtaatccatagagacctaaaagcaagtaatgttctcttagat 134  Q
    ||||||||||||||| || ||||| || || || || ||||| ||||||||| |||||||||| |||||||| || ||||| || |||||||| ||||||    
T  15692808 cattatcaatggaatagctaaaggtcttttatacctccatgaggactctagattaagagtaattcatagagatctcaaagctagcaatgttctattagat 15692709  T
Q  135 caagagatgaatccaaaaatatctgattttggattggcaagggcatttga 184  Q
    || || |||||||| |||||||| ||||||||||||||||||||||||||    
T  15692708 catgaaatgaatcccaaaatatcagattttggattggcaagggcatttga 15692659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 11 - 241
Target Start/End: Complemental strand, 15800015 - 15799785
Alignment:
Q  11 tctagattggaagttaagactgaacattatcaatggaattgcaaaaggactcttgtatcttcatgaagactctagactaagagtaatccatagagaccta 110  Q
    |||||||||||| ||| |||| | |||||||||||||||||||| |||| |  | || |||||||| || ||| |||| ||||||||||| ||||| ||     
T  15800015 tctagattggaaattacgactaagcattatcaatggaattgcaagaggattgctataccttcatgaggattctcgacttagagtaatccacagagatctg 15799916  T
Q  111 aaagcaagtaatgttctcttagatcaagagatgaatccaaaaatatctgattttggattggcaagggcatttgaaaaaggtcaaagtcaagaaaacacaa 210  Q
    ||||| || ||||||||  | ||| | || ||||||||||||||||| |||||||||||||||||  ||||||| ||||  ||| ||||   ||| ||||    
T  15799915 aaagccagcaatgttcttctggatgatgaaatgaatccaaaaatatcagattttggattggcaagaacatttgataaagaccaatgtcagacaaaaacaa 15799816  T
Q  211 gaagagttgtgggcacatagtatgtgttatt 241  Q
     ||||||| | ||||| ||||||||||||||    
T  15799815 aaagagtttttggcacctagtatgtgttatt 15799785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 35 - 194
Target Start/End: Complemental strand, 15805523 - 15805364
Alignment:
Q  35 cattatcaatggaattgcaaaaggactcttgtatcttcatgaagactctagactaagagtaatccatagagacctaaaagcaagtaatgttctcttagat 134  Q
    |||||||||||||||||||||||||||  | || |||||||| || ||| |||| ||||||||||| ||||| || ||||| || ||||||||  |||||    
T  15805523 cattatcaatggaattgcaaaaggactgctataccttcatgaggattctcgacttagagtaatccacagagatctgaaagccagcaatgttcttctagat 15805424  T
Q  135 caagagatgaatccaaaaatatctgattttggattggcaagggcatttgaaaaaggtcaa 194  Q
     | || ||||||||||||||||| ||||||||||| ||||||  ||||||||||| ||||    
T  15805423 gatgaaatgaatccaaaaatatcagattttggattagcaaggagatttgaaaaagatcaa 15805364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 11 - 241
Target Start/End: Complemental strand, 15813397 - 15813167
Alignment:
Q  11 tctagattggaagttaagactgaacattatcaatggaattgcaaaaggactcttgtatcttcatgaagactctagactaagagtaatccatagagaccta 110  Q
    ||||||||||||  || |||| | ||||||||| ||||| |||| ||||||  | || |||||||| || |||  ||| ||||||||||| ||||| ||     
T  15813397 tctagattggaaactacgactaagcattatcaaaggaatcgcaagaggacttctataccttcatgaggattctccacttagagtaatccacagagatctg 15813298  T
Q  111 aaagcaagtaatgttctcttagatcaagagatgaatccaaaaatatctgattttggattggcaagggcatttgaaaaaggtcaaagtcaagaaaacacaa 210  Q
    ||||| || ||||||||  | ||| | || ||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||   ||| ||||    
T  15813297 aaagcgagcaatgttcttctggatgatgaaatgaatccaaaaatatctgattttggattagcaagggcatttgaaaaagatcaatgtcatacaaagacaa 15813198  T
Q  211 gaagagttgtgggcacatagtatgtgttatt 241  Q
     ||||||| | ||||| ||||| | ||||||    
T  15813197 aaagagttattggcacctagtacgggttatt 15813167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 238
Target Start/End: Complemental strand, 15697483 - 15697281
Alignment:
Q  36 attatcaatggaattgcaaaaggactcttgtatcttcatgaagactctagactaagagtaatccatagagacctaaaagcaagtaatgttctcttagatc 135  Q
    |||||||||||||| |||| |||||| || || |||||  |||| ||| |||| ||||| ||||||||||| || ||||| || ||||||||  | |||     
T  15697483 attatcaatggaatcgcaagaggacttttataccttcaccaagattctcgacttagagttatccatagagatctgaaagccagcaatgttcttctggatg 15697384  T
Q  136 aagagatgaatccaaaaatatctgattttggattggcaagggcatttgaaaaaggtcaaagtcaagaaaacacaagaagagttgtgggcacatagtatgt 235  Q
    | || |||||||| |||||||| ||||||||||| ||||||  |||||||||||||||||||||   ||| |||| ||||||| | ||||| ||||| ||    
T  15697383 atgaaatgaatccgaaaatatcagattttggattagcaaggaaatttgaaaaaggtcaaagtcagacaaaaacaaaaagagttattggcacctagtaagt 15697284  T
Q  236 gtt 238  Q
    |||    
T  15697283 gtt 15697281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 194
Target Start/End: Complemental strand, 15764566 - 15764383
Alignment:
Q  11 tctagattggaagttaagactgaacattatcaatggaattgcaaaaggactcttgtatcttcatgaagactctagactaagagtaatccatagagaccta 110  Q
    |||||||||||  ||| |||| | |||| ||| ||||||||||||||||||  | || |||||||| || ||| |||| ||||||||||| || || ||     
T  15764566 tctagattggagattacgactaagcattgtcactggaattgcaaaaggactgctataccttcatgaggattctcgacttagagtaatccacagggatctg 15764467  T
Q  111 aaagcaagtaatgttctcttagatcaagagatgaatccaaaaatatctgattttggattggcaagggcatttgaaaaaggtcaa 194  Q
    ||||| || ||||||||  | ||| | || ||||||||||||||||| |||||||| || |||||| |||||||||||| ||||    
T  15764466 aaagctagcaatgttcttctggatgatgaaatgaatccaaaaatatcagattttgggttagcaaggacatttgaaaaagatcaa 15764383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 33 - 199
Target Start/End: Complemental strand, 15712154 - 15711988
Alignment:
Q  33 aacattatcaatggaattgcaaaaggactcttgtatcttcatgaagactctagactaagagtaatccatagagacctaaaagcaagtaatgttctcttag 132  Q
    ||||||||||| || || |||| |||||| || |||||||| || || ||| |||| ||||| |||||||||||  | |||||||| ||||| || || |    
T  15712154 aacattatcaacgggatagcaagaggactgttatatcttcacgaggattctcgacttagagttatccatagagatatgaaagcaagcaatgtacttttgg 15712055  T
Q  133 atcaagagatgaatccaaaaatatctgattttggattggcaagggcatttgaaaaaggtcaaagtca 199  Q
    |  | || ||||||||||||||||| || ||||||||||||||    ||||||||||| ||||||||    
T  15712054 acgatgaaatgaatccaaaaatatcagactttggattggcaagaaggtttgaaaaaggccaaagtca 15711988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 199
Target Start/End: Complemental strand, 15703813 - 15703699
Alignment:
Q  85 gactaagagtaatccatagagacctaaaagcaagtaatgttctcttagatcaagagatgaatccaaaaatatctgattttggattggcaagggcatttga 184  Q
    |||| ||||| |||||||||||||| |||||  | || |||||  ||||| | || ||||||||||||||||| |||||||||||||||||   ||||||    
T  15703813 gacttagagttatccatagagaccttaaagcctgcaacgttcttctagatgatgaaatgaatccaaaaatatcagattttggattggcaagaaaatttga 15703714  T
Q  185 aaaaggtcaaagtca 199  Q
     ||||| ||||||||    
T  15703713 gaaaggccaaagtca 15703699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 66 - 175
Target Start/End: Complemental strand, 2662588 - 2662479
Alignment:
Q  66 tatcttcatgaagactctagactaagagtaatccatagagacctaaaagcaagtaatgttctcttagatcaagagatgaatccaaaaatatctgattttg 165  Q
    |||||||||  ||| || ||||||||| |||| |||||||| ||||||||||| |||||||| ||||||   || |||||||||||||| ||||| ||||    
T  2662588 tatcttcatagagattcaagactaagaataattcatagagatctaaaagcaagcaatgttcttttagatggcgaaatgaatccaaaaatttctgactttg 2662489  T
Q  166 gattggcaag 175  Q
    || |||||||    
T  2662488 gaatggcaag 2662479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 172
Target Start/End: Complemental strand, 2698628 - 2698501
Alignment:
Q  45 ggaattgcaaaaggactcttgtatcttcatgaagactctagactaagagtaatccatagagacctaaaagcaagtaatgttctcttagatcaagagatga 144  Q
    |||||||||| ||||||| | ||||| |||   || || ||||| ||| |||| ||| |||| ||||||||||||||  || | |||||| || | ||||    
T  2698628 ggaattgcaagaggactcctttatctgcatcgtgattcaagactcagaataattcatcgagatctaaaagcaagtaacattttgttagatgaaaacatga 2698529  T
Q  145 atccaaaaatatctgattttggattggc 172  Q
    |||||||||||||||| ||||| |||||    
T  2698528 atccaaaaatatctgactttggcttggc 2698501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 166
Target Start/End: Complemental strand, 2717206 - 2717106
Alignment:
Q  66 tatcttcatgaagactctagactaagagtaatccatagagacctaaaagcaagtaatgttctcttagatcaagagatgaatccaaaaatatctgattttg 165  Q
    |||||||||  ||| || ||| ||||| |||||||||||||||||||| | |||||| || | || |||  |||  |||||||||||||||| || ||||    
T  2717206 tatcttcatagagattcgagattaagaataatccatagagacctaaaaccgagtaatattttgttggatggagaactgaatccaaaaatatccgactttg 2717107  T
Q  166 g 166  Q
    |    
T  2717106 g 2717106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 27368723 - 27368659
Alignment:
Q  111 aaagcaagtaatgttctcttagatcaagagatgaatccaaaaatatctgattttggattggcaag 175  Q
    |||||||| ||| |||| |||||  ||||||||||||| || ||||| |||||||||||||||||    
T  27368723 aaagcaagcaatattcttttagacgaagagatgaatcctaagatatccgattttggattggcaag 27368659  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 487060 - 487002
Alignment:
Q  66 tatcttcatgaagactctagactaagagtaatccatagagacctaaaagcaagtaatgt 124  Q
    |||||||||||||| ||||||||   | |||| |||||||| |||||||||||||||||    
T  487060 tatcttcatgaagattctagacttcaaataatacatagagatctaaaagcaagtaatgt 487002  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 172
Target Start/End: Original strand, 31708193 - 31708301
Alignment:
Q  64 tgtatcttcatgaagactctagactaagagtaatccatagagacctaaaagcaagtaatgttctcttagatcaagagatgaatccaaaaatatctgattt 163  Q
    ||||||||||| |||| ||| || ||||  | || |||||||| || ||||||||||||||| | || |||||  || |||| ||||||||||| |||||    
T  31708193 tgtatcttcatcaagattctcgattaaggattattcatagagatctcaaagcaagtaatgttttgttggatcacaagttgaacccaaaaatatcagattt 31708292  T
Q  164 tggattggc 172  Q
    |||| ||||    
T  31708293 tggaatggc 31708301  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 31740589 - 31740650
Alignment:
Q  64 tgtatcttcatgaagactctagactaagagtaatccatagagacctaaaagcaagtaatgtt 125  Q
    ||||||||||  |||| ||| || ||||| | |||||||||||||| |||||||||||||||    
T  31740589 tgtatcttcaccaagattctcgattaagaattatccatagagacctcaaagcaagtaatgtt 31740650  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 172
Target Start/End: Complemental strand, 14520008 - 14519920
Alignment:
Q  84 agactaagagtaatccatagagacctaaaagcaagtaatgttctcttagatcaagagatgaatccaaaaatatctgattttggattggc 172  Q
    ||||| ||| |||| ||| |||| |||||| |||||||  || | |||||| || | |||||||||||||||||||| ||||| |||||    
T  14520008 agactcagaataattcatcgagatctaaaaccaagtaacattttgttagatgaaaacatgaatccaaaaatatctgactttggcttggc 14519920  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 175
Target Start/End: Original strand, 47061874 - 47061906
Alignment:
Q  143 gaatccaaaaatatctgattttggattggcaag 175  Q
    |||| ||||||||||||||||||||||||||||    
T  47061874 gaatgcaaaaatatctgattttggattggcaag 47061906  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 6497846 - 6497782
Alignment:
Q  111 aaagcaagtaatgttctcttagatcaagagatgaatccaaaaatatctgattttggattggcaag 175  Q
    |||||||||||  ||||||||||| |||| |||||||| || ||||||||||||||  |||||||    
T  6497846 aaagcaagtaacattctcttagatgaagaaatgaatcctaagatatctgattttggcatggcaag 6497782  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 47771006 - 47771070
Alignment:
Q  111 aaagcaagtaatgttctcttagatcaagagatgaatccaaaaatatctgattttggattggcaag 175  Q
    |||||||| ||  ||||||||||  | ||||||||||| || |||||||||||||||||||||||    
T  47771006 aaagcaagcaacattctcttagacgatgagatgaatcctaagatatctgattttggattggcaag 47771070  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 176
Target Start/End: Complemental strand, 6510800 - 6510735
Alignment:
Q  111 aaagcaagtaatgttctcttagatcaagagatgaatccaaaaatatctgattttggattggcaagg 176  Q
    |||||||| ||| ||||||| ||| ||||||||||||| || ||| ||||||||||  ||||||||    
T  6510800 aaagcaagcaatattctcttggatgaagagatgaatcctaagatagctgattttggcatggcaagg 6510735  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 175
Target Start/End: Complemental strand, 6503192 - 6503116
Alignment:
Q  99 catagagacctaaaagcaagtaatgttctcttagatcaagagatgaatccaaaaatatctgattttggattggcaag 175  Q
    |||||||| || |||||||||||| ||||||| ||| || | |||||||| || ||| ||||||||||  |||||||    
T  6503192 catagagatctcaaagcaagtaatattctcttggatgaacatatgaatcctaagatagctgattttggcatggcaag 6503116  T

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Target: scaffold0341 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 176
Target Start/End: Complemental strand, 12480 - 12415
Alignment:
Q  111 aaagcaagtaatgttctcttagatcaagagatgaatccaaaaatatctgattttggattggcaagg 176  Q
    |||||||| ||| ||||||| ||| ||||||||||||| || ||| ||||||||||  ||||||||    
T  12480 aaagcaagcaatattctcttggatgaagagatgaatcctaagatagctgattttggcatggcaagg 12415  T

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Target: scaffold0341; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 175
Target Start/End: Complemental strand, 4871 - 4795
Alignment:
Q  99 catagagacctaaaagcaagtaatgttctcttagatcaagagatgaatccaaaaatatctgattttggattggcaag 175  Q
    |||||||| || |||||||||||| ||||||| ||| || | |||||||| || ||| ||||||||||  |||||||    
T  4871 catagagatctcaaagcaagtaatattctcttggatgaacatatgaatcctaagatagctgattttggcatggcaag 4795  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 166
Target Start/End: Original strand, 20263955 - 20264040
Alignment:
Q  81 tctagactaagagtaatccatagagacctaaaagcaagtaatgttctcttagatcaagagatgaatccaaaaatatctgattttgg 166  Q
    ||||| |||||| | || ||||||||  | || |||||||||||||| |||||| | ||| |||||||||||||||| || |||||    
T  20263955 tctaggctaagaattattcatagagatttgaaggcaagtaatgttctgttagatgaggagttgaatccaaaaatatcagactttgg 20264040  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 172
Target Start/End: Original strand, 20294594 - 20294702
Alignment:
Q  64 tgtatcttcatgaagactctagactaagagtaatccatagagacctaaaagcaagtaatgttctcttagatcaagagatgaatccaaaaatatctgattt 163  Q
    ||||||||||   ||| ||||| |||||| | || ||||||||  | || ||||||||||| || |||||| | ||| |||||||||||||||| || ||    
T  20294594 tgtatcttcaccgagattctaggctaagaattattcatagagatttgaaggcaagtaatgtcctgttagatgaggagctgaatccaaaaatatcggactt 20294693  T
Q  164 tggattggc 172  Q
    |||| ||||    
T  20294694 tggaatggc 20294702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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