View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0573_low_9 (Length: 310)
Name: NF0573_low_9
Description: NF0573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0573_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 29 - 300
Target Start/End: Original strand, 6967569 - 6967840
Alignment:
| Q |
29 |
caaagaacgaccctaaatacttattttatattataatttaaaattgttttaaatagttaaattatgaggttaaaggacatacacgaataatgatatctaa |
128 |
Q |
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| T |
6967569 |
caaagaacgaccctaaatacttgttttatattataatttaaaaatgttttaaatagttaaattatgaggttaaaggatatacacgaatagtgatatctaa |
6967668 |
T |
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| Q |
129 |
ttagaactcaagattttaaaattaattttaagatatatagtaagaactggcgaaataaaacagtgatttttcattgaatatatcaagtaaaaccagttga |
228 |
Q |
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| T |
6967669 |
ttagaactcaagattttaaatttaattttaagatatatagtaagaactggcgaaataaaacagtgatttttcattgaatatatcaagtaaaaccagttga |
6967768 |
T |
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| Q |
229 |
cacttatcctacatgttacttcaactattgaatcaatgccaatatgcaaaacttgtataaattagcttcatc |
300 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6967769 |
cacttatcctacatgttacttaaactattgaatcaatgccaatatgcaaaacttgtataaattagcttcatc |
6967840 |
T |
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