View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0575_low_1 (Length: 688)
Name: NF0575_low_1
Description: NF0575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0575_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 532; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 98 - 679
Target Start/End: Original strand, 12149010 - 12149599
Alignment:
| Q |
98 |
atttctagatattcaaatgt----atgtatgtatactcattgtcgttcataatgtaaaaaaccatggtcatgcattaaatcactagcaaaaataaagcaa |
193 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
12149010 |
atttctagatattcaaatgtatgtatgtatgtatactcattgtcattcataatgtaaacaaccatggtcatgcattaaatcactagcaaaaataatgcaa |
12149109 |
T |
|
| Q |
194 |
aatctatccaccgactcattcatgatttatattcaatcactcattcatggatctcttgacatcatcattctcactcaattctagtgctaccaatcaaaga |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
12149110 |
aatctatccaccgactcattcatgatttatattcaatcactcattcatggatctcttgacatcatcgttctcactcaattctagtgctaccaatcaaaga |
12149209 |
T |
|
| Q |
294 |
tcatgtacaagaccaggttgttatatatctaagataaattgttttcacacaatcctcaaaacaaaacaacactcttttcatacaatctgaatgttgctga |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
12149210 |
tcatgtacaagaccaggttgttatatatctaagataaattgttttcacacaatcctcaaaacaaaacaacactcttttcatacaatctgaatgttgccga |
12149309 |
T |
|
| Q |
394 |
tccacttactaataatagtaacttgggaaaaaagataagaacaaaataatttaatgctcttattctttcctataaatacccaacattcagcaacttcatt |
493 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
12149310 |
tccacttactaataatagtaacttgggaaaaaagataagaacaaaataatttaatgctcttattctttcctataaatacccaacattgagcaacttcatt |
12149409 |
T |
|
| Q |
494 |
ttcatccatcatatacttatatcgatacaca----taagtttcaaagtgagtacttcttgaaaatgaattccaaggcgttactttttctagccatgttgt |
589 |
Q |
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| T |
12149410 |
ttcatccatcatatacttatatcgatacacataattaagtttcaaagtgagtacttcttgaaaatgaattccaaggcgttactttttctagccatgttgt |
12149509 |
T |
|
| Q |
590 |
tggcttccatccttctcatttgtgcagagtctgcacccaaagacttggacaacaaagatggtaatactaattttttacatttagtataat |
679 |
Q |
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| T |
12149510 |
tggcttccatccttctcatttgtgcagagtctgcacccaaagacttggacaacaaagatggtaatactaattttttacatttagtataat |
12149599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 462 - 679
Target Start/End: Original strand, 12163866 - 12164083
Alignment:
| Q |
462 |
cctataaatacccaacattcagcaacttcattttcatccatcatatacttata-tcgatacacataagtttcaaagtgagtacttcttgaaaatgaattc |
560 |
Q |
| |
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||||||||||||||||||| | |||||||||||||| |||| |||||| | | |||||| |||||||||| || |||||||| | ||||||||||| |
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| T |
12163866 |
cctataaatacccaacatttggtcacttcattttcatcaatca-atacttttcctagatacatataagtttcatagagagtactttataaaaatgaattc |
12163964 |
T |
|
| Q |
561 |
caaggcgttactttttctagccatgttgttggcttccatccttctcatttgtgcagagtctgcacccaaagacttggacaacaaagatggtaatactaat |
660 |
Q |
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||||| |||||||| ||||||||| |||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
12163965 |
aaaggctttacttttcctagccatgctgttggctaccatccttcttatatgtgcagagtctgcacccaaagacttggacaacaaagatggtaatactagt |
12164064 |
T |
|
| Q |
661 |
tttttacatttagtataat |
679 |
Q |
| |
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||| |||||||||||||| |
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| T |
12164065 |
tttgaacatttagtataat |
12164083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 550 - 641
Target Start/End: Complemental strand, 12146339 - 12146248
Alignment:
| Q |
550 |
aaaatgaattccaaggcgttactttttctagccatgttgttggcttccatccttctcatttgtgcagagtctgcacccaaagacttggacaa |
641 |
Q |
| |
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||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| || ||| ||| |||||||||||||||||||||| |
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| T |
12146339 |
aaaatgaattccaaggctttactttttctagctatgttgttggcttccatccttctcagttctgctgagactgcacccaaagacttggacaa |
12146248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 336 - 434
Target Start/End: Original strand, 12163702 - 12163804
Alignment:
| Q |
336 |
tttcacacaatcctcaaaacaaaacaacactcttttcatacaatctgaatgt----tgctgatccacttactaataatagtaacttgggaaaaaagataa |
431 |
Q |
| |
|
||||| ||||||||||||||||||||| | ||| |||||||||| ||||||| ||||||||||||||||||||||||||||| | || |||||||| |
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| T |
12163702 |
tttcatacaatcctcaaaacaaaacaaaattctcttcatacaatttgaatgtatgttgctgatccacttactaataatagtaactcagaaataaagataa |
12163801 |
T |
|
| Q |
432 |
gaa |
434 |
Q |
| |
|
||| |
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|
| T |
12163802 |
gaa |
12163804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 549 - 608
Target Start/End: Original strand, 12175328 - 12175387
Alignment:
| Q |
549 |
gaaaatgaattccaaggcgttactttttctagccatgttgttggcttccatccttctcat |
608 |
Q |
| |
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||||||||||||||| | ||||||||||||||| ||| | ||||||||||| |||||||| |
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|
| T |
12175328 |
gaaaatgaattccaaagggttactttttctagctatgctcttggcttccattcttctcat |
12175387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 549 - 608
Target Start/End: Original strand, 12188300 - 12188359
Alignment:
| Q |
549 |
gaaaatgaattccaaggcgttactttttctagccatgttgttggcttccatccttctcat |
608 |
Q |
| |
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||||||||||||||| | |||||||||||| | |||||| ||||||||||||||||||| |
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| T |
12188300 |
gaaaatgaattccaaagggttactttttcttactatgttgctggcttccatccttctcat |
12188359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 550 - 608
Target Start/End: Original strand, 12182296 - 12182354
Alignment:
| Q |
550 |
aaaatgaattccaaggcgttactttttctagccatgttgttggcttccatccttctcat |
608 |
Q |
| |
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|||||||||||||| | |||||||||||| | |||||| ||||||||||||||||||| |
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| T |
12182296 |
aaaatgaattccaaagggttactttttcttactatgttgctggcttccatccttctcat |
12182354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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