View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0575_low_2 (Length: 451)
Name: NF0575_low_2
Description: NF0575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0575_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 29 - 373
Target Start/End: Original strand, 32444462 - 32444803
Alignment:
| Q |
29 |
atcaaagtttcctccagtcagccagcaatactgattaacaacactagtgatggtgagcatctggcccagaaggtgccactctctccaattggttaccaag |
128 |
Q |
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| T |
32444462 |
atcaaagtttcctccagtcagccagcaatactgattaacaacactagtgatggtgagcatctggcccagaaggtgccactctctccaattggttaccaag |
32444561 |
T |
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| Q |
129 |
cattgacctcttgtggatatgctcactattatttcttgcaatatatttgatcatgtcacgtaaaagtagttcactactaacctttttagtactcatcata |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
32444562 |
cattgacctcttgtggatatgctcactattatttcttgcaatagatttgatcatgtcacgtaaaagtagttcactactaacctttttaggac---tcata |
32444658 |
T |
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| Q |
229 |
gatgagaattttggaaaagttctaccctcagaactcataactaatggaataataattaagaaaagaatcaatgctcttgacatcattgtagtggccatga |
328 |
Q |
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| T |
32444659 |
gatgagaattttggaaaagttctaccctcagaactcataactaatggaataataattaagaaaagaatcaatgctcttgacatcattgtagtggccatga |
32444758 |
T |
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| Q |
329 |
acttagaaaattacaaataactaaaatgctctatgttgtgtgtct |
373 |
Q |
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| T |
32444759 |
acttagaaaattacaaataactaaaatgctctatgttgtgtgtct |
32444803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 35 - 326
Target Start/End: Original strand, 32437502 - 32437793
Alignment:
| Q |
35 |
gtttcctccagtcagccagcaatactgattaacaacactagtgatggtgagcatctggcccagaaggtgccactctctccaattggttaccaagcattga |
134 |
Q |
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|||||||||| ||||||| |||||||| |||||| ||||||||| |||| ||||||||||| |||||| |||||||||||||| |||||||||||| |
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| T |
32437502 |
gtttcctccactcagccaacaatactggttaaca---ctagtgatgctgagaatctggcccagcaggtgcaactctctccaattgcccaccaagcattga |
32437598 |
T |
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| Q |
135 |
cctcttgtggatatgctcactattatttcttgcaatatatttgatcatgtcacgtaaaagtagttcactactaacctttttagtactcatcatagatgag |
234 |
Q |
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||||||||| |||| |||||||||| ||||| |||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
32437599 |
cctcttgtgaatatactcactattaattcttacaatatttttgatcatgtcacgtaaaagtagctcactaccaacctttttagtactcatcatagatgag |
32437698 |
T |
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| Q |
235 |
aattttggaaaagttctaccctcagaactcataactaatg---gaataataattaagaaaagaatcaatgctcttgacatcattgtagtggccat |
326 |
Q |
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||||| || ||||||||| |||| |||||||||| ||||| ||| ||||||||| || | ||||||||| || ||||| ||||||| ||||| |
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| T |
32437699 |
aatttaggcaaagttctagcctctgaactcataaataatggaagaacaataattaaaaagaaaatcaatgccctatacatctttgtagtagccat |
32437793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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