View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0575_low_4 (Length: 344)
Name: NF0575_low_4
Description: NF0575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0575_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 43 - 287
Target Start/End: Original strand, 36900001 - 36900245
Alignment:
| Q |
43 |
gtcaccaatcgaggaagtccggttaacggtgnnnnnnnccgacgacccaacacttccagtatggaccttccgcatgtggtttctaggtcttctctcatgc |
142 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36900001 |
gtcaccaatcgaggaagtccggttaacggtgaaaaaaaccgacgacccaacacttccagtatggaccttccgcatgtggtttctaggtcttctctcatgc |
36900100 |
T |
|
| Q |
143 |
gctctcctctcctttctcaaccaattcttcgcataccgaaccgaaccactcatcataactcaaatcaccgttcaagtcgccacactccccctcggccacc |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36900101 |
gctctcctctcctttctcaaccaattcttcgcataccgaaccgaaccactcatcataactcaaatcaccgttcaagtcgccacactccccctcggccacc |
36900200 |
T |
|
| Q |
243 |
tcatggcctccgtgttaccttcaaagacgttcaggatcacaggtt |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
36900201 |
tcatggcctccgtgttaccttcaaagacgttcaggatcccaggtt |
36900245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 81 - 231
Target Start/End: Complemental strand, 2176335 - 2176185
Alignment:
| Q |
81 |
ccgacgacccaacacttccagtatggaccttccgcatgtggtttctaggtcttctctcatgcgctctcctctcctttctcaaccaattcttcgcataccg |
180 |
Q |
| |
|
||||||||||||| | ||||||||||| ||||| |||||||| ||||||| | |||||| | ||||| || || ||||||||||||||||| ||||| |
|
|
| T |
2176335 |
ccgacgacccaacccaaccagtatggacattccgtatgtggttcttaggtctcatttcatgctcactcctttctttcctcaaccaattcttcgcttaccg |
2176236 |
T |
|
| Q |
181 |
aaccgaaccactcatcataactcaaatcaccgttcaagtcgccacactccc |
231 |
Q |
| |
|
|| |||||||||||||| |||| || |||||||| || || |||||||| |
|
|
| T |
2176235 |
tacagaaccactcatcatcactctcataaccgttcaggtagctacactccc |
2176185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 333
Target Start/End: Complemental strand, 7499855 - 7499821
Alignment:
| Q |
299 |
ctgcctcttgccttttcctttctttctccctctct |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
7499855 |
ctgcctcttgccttttcctttctttctccctctct |
7499821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2903 times since January 2019
Visitors: 3831