View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0576_high_3 (Length: 292)
Name: NF0576_high_3
Description: NF0576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0576_high_3 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 26 - 292
Target Start/End: Complemental strand, 33532426 - 33532160
Alignment:
| Q |
26 |
tcaaattcaagaccaacaaactcagaaattcatcatctgttcattcactacctatcaagacagttaacaatacacaacaaaaagaatcaaaagggtcgcc |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33532426 |
tcaaattcaagaccaacaaactcagaaattcatcatctgttcattcactacctatcaagacagttaacaatacacaacaaaaagaatcaaaagggtcgcc |
33532327 |
T |
|
| Q |
126 |
aaatcatgagtcaaaagttccaactgagactcaagcaagaaaaagcatcactttttctcacacacctacagattctgcaagaagctcaattcaacagaaa |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33532326 |
aaatcatgagtcaaaagttccaactgagactcaagcaagaaaaagcatcactttttctcacacacctacagattctgcaagaagctcaattcaacagaaa |
33532227 |
T |
|
| Q |
226 |
gagcctaatggtaattccttaggacttgcaagaataagtactagtagtactactactactattcgtc |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33532226 |
gagcctaatggtaattccttaggacttgcaagaataagtactagtagtactactactactattcgtc |
33532160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 26 - 187
Target Start/End: Original strand, 14427973 - 14428128
Alignment:
| Q |
26 |
tcaaattcaagaccaacaaactcagaaattcatcatctgttcattcactacctatcaagacagttaacaatacacaacaaaaagaatcaaaagggtcgcc |
125 |
Q |
| |
|
|||||||| |||||||||| ||| |||||||||| | |||||||||| ||||| ||| |||||||| ||||||||||||| | |||||||| || |
|
|
| T |
14427973 |
tcaaattcgagaccaacaagctctgaaattcatcgt------attcactacccatcaaaacaattaacaatccacaacaaaaagatcccaaagggtcacc |
14428066 |
T |
|
| Q |
126 |
aaatcatgagtcaaaagttccaactgagactcaagcaagaaaaagcatcactttttctcaca |
187 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
14428067 |
aaatcatgagtcaaaagttccaacagagcctcaagcaagaaaaagcactactttttctcaca |
14428128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 87 times since January 2019
Visitors: 3832