View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0576_low_2 (Length: 313)
Name: NF0576_low_2
Description: NF0576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0576_low_2 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 41 - 313
Target Start/End: Original strand, 5842239 - 5842511
Alignment:
| Q |
41 |
cacaatccaatgaccatgtatcttcacaagaggaaggattagatggtagtactatttcaggtataattggattttgattgggtaggaatctggcattgaa |
140 |
Q |
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| T |
5842239 |
cacaatccaatgaccatgtatcttcacaagaggaaggattagatggtagtactatttcaggtataattggattttgattgggtaggaatctggcattgaa |
5842338 |
T |
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| Q |
141 |
atggttattgatgtctaccattgtaccagtttggtgaaaacattgcatatttggagacgagtttgaaaggtataggtgatcttgatggtgaggattgaag |
240 |
Q |
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| T |
5842339 |
atggttattgatgtctaccattgtaccagtttggtgaaaacattgcatatttggagacgagtttgaaaggtataggtgatcttgatggtgaggattgaag |
5842438 |
T |
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| Q |
241 |
tttagcatcacattagggtttgcatttaaaggaaaaatactttccttaaaaccagcactgtaggggaggtgaa |
313 |
Q |
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| T |
5842439 |
tttagcatcacattagggtttgcatttaaaggaaaaaaagtttccttaaaaccatcactgtaggagaggtgaa |
5842511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 41 - 313
Target Start/End: Original strand, 5848949 - 5849221
Alignment:
| Q |
41 |
cacaatccaatgaccatgtatcttcacaagaggaaggattagatggtagtactatttcaggtataattggattttgattgggtaggaatctggcattgaa |
140 |
Q |
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| T |
5848949 |
cacaatccaatgaccatgtatcttcacaagaggaaggattagatggtagtactatttcaggtataattggattttgattgggtaggaatctggcattgaa |
5849048 |
T |
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| Q |
141 |
atggttattgatgtctaccattgtaccagtttggtgaaaacattgcatatttggagacgagtttgaaaggtataggtgatcttgatggtgaggattgaag |
240 |
Q |
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| T |
5849049 |
atggttattgatgtctaccattgtaccagtttggtgaaaacattgcatatttggagacgagtttgaaaggtataggtgatcttgatggtgaggattgaag |
5849148 |
T |
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| Q |
241 |
tttagcatcacattagggtttgcatttaaaggaaaaatactttccttaaaaccagcactgtaggggaggtgaa |
313 |
Q |
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| T |
5849149 |
tttagcatcacattagggtttgcatttaaaggaaaaaaagtttccttaaaaccatcactgtaggagaggtgaa |
5849221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 41 - 313
Target Start/End: Original strand, 5886540 - 5886812
Alignment:
| Q |
41 |
cacaatccaatgaccatgtatcttcacaagaggaaggattagatggtagtactatttcaggtataattggattttgattgggtaggaatctggcattgaa |
140 |
Q |
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| T |
5886540 |
cacaatccaatgaccatgtatcttcacaagaggaaggattagatggtagtactatttcaggtataattggattttgattgggtgggaacttggcattgaa |
5886639 |
T |
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| Q |
141 |
atggttattgatgtctaccattgtaccagtttggtgaaaacattgcatatttggagacgagtttgaaaggtataggtgatcttgatggtgaggattgaag |
240 |
Q |
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| T |
5886640 |
attgttattgatgtctacctttgtatcaggttgttgaaaacattgcagatttggaaatgaatttgaaaggtataggagatcttgatggtaaggattgaag |
5886739 |
T |
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| Q |
241 |
tttagcatcacattagggtttgcatttaaaggaaaaatactttccttaaaaccagcactgtaggggaggtgaa |
313 |
Q |
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| T |
5886740 |
tttaggatcacattagggtttgcatttaaaggaaagaaacttttcttagaaccggtattgtaggggatgtgaa |
5886812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 106 - 272
Target Start/End: Original strand, 5947957 - 5948129
Alignment:
| Q |
106 |
attggattttgattgggtaggaatctggcattgaaatggttattgatgtctaccattgtaccagtttggtgaaaa---cattgcatatttggagacgagt |
202 |
Q |
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| T |
5947957 |
attggattttgaatgagagggaaattggcattataatggtcattgatgtctacctttgtatcaatttgatgaaaattaccttgtagatttggagatgagg |
5948056 |
T |
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| Q |
203 |
ttgaaaggtataggtgatcttgatggtgag---gattgaagtttagcatcacattagggtttgcatttaaagg |
272 |
Q |
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| T |
5948057 |
ttgaatggtataggtaatcttgatggttataatgattgaagttgaggatcacattagggtttgcatttaaagg |
5948129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 106 - 272
Target Start/End: Original strand, 5983558 - 5983730
Alignment:
| Q |
106 |
attggattttgattgggtaggaatctggcattgaaatggttattgatgtctaccattgtaccagtttggtgaaaa---cattgcatatttggagacgagt |
202 |
Q |
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| T |
5983558 |
attggattttgaatgtgagggaaattggcattataatggtcattgatgtctacctttgtatcaatttgatgaaaattaccttgtagatttggagatgagg |
5983657 |
T |
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| Q |
203 |
ttgaaaggtataggtgatcttgatggtgag---gattgaagtttagcatcacattagggtttgcatttaaagg |
272 |
Q |
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| T |
5983658 |
ttgaatggtataggtaatcttgatggttataatgattgaagttgaggatcacattagggtttgcatttaaagg |
5983730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 268
Target Start/End: Original strand, 5920307 - 5920539
Alignment:
| Q |
42 |
acaatccaatgaccatgtatcttcacaagaggaaggattaga---tggtagtactatttcaggtataattggattttgattgggtaggaatctggcattg |
138 |
Q |
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| T |
5920307 |
acaacccaatgaccatgtatcttcataaggggaaggattagacattggttgtaagatttctggtat---tggattttgaatgtgaaggaaattgccatta |
5920403 |
T |
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| Q |
139 |
aaatggttattgat---gtctaccattgtaccagtttggtgaaaa---cattgcatatttggagacgagtttgaaaggtataggtgatcttgatggtgag |
232 |
Q |
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| T |
5920404 |
taatggttattgatcatgtctacctttgtatcaatttggtgaaaattaccttgtagatttggagatgaggttggatagcatagttgatcttcatggtgat |
5920503 |
T |
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| Q |
233 |
gattgaagtttagcatcacattagggtttgcattta |
268 |
Q |
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| T |
5920504 |
ggttgaaatttagaatcacattagggtttgcattta |
5920539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 109 - 272
Target Start/End: Original strand, 5959043 - 5959212
Alignment:
| Q |
109 |
ggattttgattgggtaggaatctggcattgaaatggttattgatgtctaccattgtaccagtttggtgaaaa---cattgcatatttggagacgagtttg |
205 |
Q |
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| T |
5959043 |
ggattttgaatgtgaaggaaattggcattataatggtcattgatgtctacctttgtatcaatttgatgaaaattactttgctgatttggagatgaggttg |
5959142 |
T |
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| Q |
206 |
aaaggtataggtgatcttgatgg---tgaggattgaagtttagcatcacattagggtttgcatttaaagg |
272 |
Q |
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| T |
5959143 |
aatggtataggtaatcttgatggtgatgatgattgaagttgagggtcacattcgggtttgcatttaaagg |
5959212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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