View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0576_low_6 (Length: 265)
Name: NF0576_low_6
Description: NF0576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0576_low_6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 30 - 265
Target Start/End: Complemental strand, 44866395 - 44866160
Alignment:
| Q |
30 |
ctttttccttgatgcaatcgttagccctaattttttcaatttactggatatttgagctgaagatattttaccatctggatctagcacttcagcaatacgt |
129 |
Q |
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| T |
44866395 |
ctttttccttgatgcaatcgttagccctaattttttcaatttactggatatttgagctgtagatattttaccatctggatcaagcacttcagcaatacgt |
44866296 |
T |
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| Q |
130 |
cgactgcaatttcggtcatctttgaatctgatatgttcaaggcatggaagaaccgattatcaaaatgaatttatcatttaataaacaagnnnnnnnnnnc |
229 |
Q |
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| T |
44866295 |
cgactgcaatttcggtcatctttgaatctgatatgttcaaggcatggaagaaccgattatcaaaatgaatttatcattttataaacaagaaaaaaaaaac |
44866196 |
T |
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| Q |
230 |
tgacaagctattaatttatttattaggctgactctt |
265 |
Q |
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|||||||||||||||| |||||| |||||||||||| |
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| T |
44866195 |
tgacaagctattaattaatttatcaggctgactctt |
44866160 |
T |
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