View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0577_low_2 (Length: 441)
Name: NF0577_low_2
Description: NF0577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0577_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 30 - 369
Target Start/End: Original strand, 43376358 - 43376706
Alignment:
| Q |
30 |
atcatcacaagtaagaccctccatctccctctctcttattcatgtttgtaacaaaatcattattannnnnnngtttgtgtctttcaattccataataact |
129 |
Q |
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| T |
43376358 |
atcatcacaagtaagaccctccatctccctctctcttattcatgtttgtaacaaaatcattatttattttttgtttgtgtctttcaattccataataact |
43376457 |
T |
|
| Q |
130 |
attgatatttgaatataactgttgtaacaaataattttttataggt---------tatttgttcttgttatcccctgttttgaaaaattcaattttgtga |
220 |
Q |
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| T |
43376458 |
attgatatttgaatataactgttgtaacaaataaatttttataggttattaaggttatttgttcttgttatcccctgttttgaaaaattcaattttgtga |
43376557 |
T |
|
| Q |
221 |
ttcaaaataatttgcttgaaatgaattgatcttcaaaacctgttacatttccaagtctcatgatgtgtaacttgtgttacatctatgcagcacccattgt |
320 |
Q |
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|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43376558 |
ttcaaaataatttgcttgaaataaagtgatcttcaaaacctgttacatttccaagtctcatgatgtgtaacttgtgttacatctatgtagcacccattgt |
43376657 |
T |
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| Q |
321 |
tgatctaatcacgtttgtatcgacatgatactgatatgcatctaataac |
369 |
Q |
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| T |
43376658 |
tgatctaatcacgtttgtatcgacatgatactgatatgcatctaataac |
43376706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 427
Target Start/End: Original strand, 43376708 - 43376744
Alignment:
| Q |
391 |
atcaattaatttattttctcaaattatcatctgtgtc |
427 |
Q |
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| T |
43376708 |
atcaattaatttattttctcaaattatcatccgtgtc |
43376744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 420
Target Start/End: Original strand, 32102884 - 32102912
Alignment:
| Q |
392 |
tcaattaatttattttctcaaattatcat |
420 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
32102884 |
tcaattaatttattttctcaaattatcat |
32102912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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