View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0580-Insertion-1 (Length: 767)
Name: NF0580-Insertion-1
Description: NF0580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0580-Insertion-1 |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 610; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 7 - 767
Target Start/End: Complemental strand, 48932923 - 48932163
Alignment:
| Q |
7 |
aataagggccccaaataaaatctgctttcatgtaatgcatgtatattcttctccaannnnnnngatcatctgctttcattgcatccttctaggcnnnnnn |
106 |
Q |
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| T |
48932923 |
aataagggccccaaataaaatctgctttcatgtaatgcatgtatattcttctccactttttttgatcatctgctttcattgcatccttctaggctttttt |
48932824 |
T |
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| Q |
107 |
ngacaaatccttctaggcnnnnnnnattctttttataatgaaataaaccttaatatannnnnnnggtaagaaataaacctgaaatttgacttgaatgaat |
206 |
Q |
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| T |
48932823 |
tgacaaatccttctaggctttttttattctttttataatgaaataaaccttaatatatttttttggtaagaaataaacctgaaatttgacttgaatgaat |
48932724 |
T |
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| Q |
207 |
gacaatgagaacataagaaagaaaaatacaaatccgtgatctccaatctccatcttcttctgtaactcccccaacaaccaatctaaccnnnnnnnnngaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
48932723 |
gacaatgagaacataagaaagaaaaatacaaatccgtgatctccaatctccatcttcttctgtaactcccccaacaaccaatctaaccaaaaaaaaaaaa |
48932624 |
T |
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| Q |
307 |
acctaaccctctttaacaaaccccactttcctaatttacctttccacaaaaattccaacattcaattactaagaatcaacaacaattctggagcaaattt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48932623 |
acctaaccctctttaacaaaccccactttcctaatttacctttccacaaaaattccaacattcaattactaagaatcaacaacaattctggagcaaattt |
48932524 |
T |
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| Q |
407 |
ttggaaatttctgatctgggttttcaattttacatcttcaattttatttatttatctattacttcgatgtgcatcatcaacatagaggttcaaaaatcca |
506 |
Q |
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| T |
48932523 |
ttggaaatttctgatctgggttttcaattttacatcttcaattttatttatctatctattacttcgatgtgcatcatcaacatagagtttcaaaaatcca |
48932424 |
T |
|
| Q |
507 |
agatcttcaacgacccagtaacgcaattagtttcaaaatccaaactttaaccaaacccacttctcaaaatctaaactttcatatgcccacgtagtgaaat |
606 |
Q |
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| T |
48932423 |
agatcttcaacgacccagtaacgcaattagtttcaaaatccaaactttaaccaaacccacttctcaaaatctaaactttcatatgcccacgtagtgaaat |
48932324 |
T |
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| Q |
607 |
cagttatgggagctgnnnnnnnntggcttttcacgctattcagtgcagcagttttatctctaatgcttttgttaatgtcttctttttcaactttcagttc |
706 |
Q |
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| T |
48932323 |
cagttatgggagctgaaaaaaaatggcttttcacgctattcagtgcagcagttttatctctaatgcttttgttaatgtcttctttttcaactttcagttc |
48932224 |
T |
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| Q |
707 |
tcaaaagccttttccatcttttgttcaacatggttctcattaccctcctgcttttgcatac |
767 |
Q |
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| T |
48932223 |
tcaaaagccttttccatcttttgttcaacatggttctcattaccctcctgcttttgcatac |
48932163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 419 - 767
Target Start/End: Original strand, 9392153 - 9392499
Alignment:
| Q |
419 |
gatctgggttttcaattttacatcttcaattttatttatttatctattacttcgatgtgcatcatcaacatagaggttcaaaaatccaagatcttcaacg |
518 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||| | |||||||||||||||| |||||||||||||||||||||| | |
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| T |
9392153 |
gatcttggttttcaattttacatcttcaattttatttatttatgtattccttcgatttacatcatcaacatagagtttcaaaaatccaagatcttcaatg |
9392252 |
T |
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| Q |
519 |
acccagtaacgcaattagtttcaaaatccaaactttaaccaaacccacttctcaaaatctaaactttcatatgcccacgtagtgaaatcagttatgggag |
618 |
Q |
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| T |
9392253 |
acccattaacacaaatagtttcaaaatccaaactttaacc-aacccacttctcaaaatcgttgatttcatatgcccacatagtgaaattagttatgggag |
9392351 |
T |
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| Q |
619 |
ctgnnnnnnnntggcttttcacgctattcagtgcagcagttttatctctaatgcttttgttaatgtcttctttttcaactttcagttctcaaaagccttt |
718 |
Q |
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||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9392352 |
ctg-aaaaaaatggcttttcacgctattcagtgtagcagttttatctctaatgcttttgttaatgtcttctttttcaactttcagttctcaaaagccttt |
9392450 |
T |
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| Q |
719 |
tccatcttttgttcaacatggttctcattaccctcctgcttttgcatac |
767 |
Q |
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| T |
9392451 |
tccatctcttgttcaacatggttctcattaccctctggcttttgcatac |
9392499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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