View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0580-Insertion-2 (Length: 438)
Name: NF0580-Insertion-2
Description: NF0580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0580-Insertion-2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 8 - 438
Target Start/End: Original strand, 51223757 - 51224188
Alignment:
| Q |
8 |
aatgcaacttcaggttcttctcaacaccttgtactatcaccggaagtacttctaccgttcctgttgttgccattttgtagaactgctcgttgttccacac |
107 |
Q |
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| T |
51223757 |
aatgcaacttcaggttcttctcaacaccttgtactatcaccggaagtacttctaccgttcctgttgttgccattttgtagaactgctcgttgttccacac |
51223856 |
T |
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| Q |
108 |
atacagtgccctctcagctacctgaaaccacatttatatgcatcatcataaacaaatttcactgtcagtgtaaaaatatttttcacttgcatccaatcgc |
207 |
Q |
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| T |
51223857 |
atacagtgccctctcagctacctgaaaccacatttatatgcatcatcataaacaaatttcactgtcagtgtaaaaatatttttcacttgcatccaatcac |
51223956 |
T |
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| Q |
208 |
atcttatcattatgccaaacggttaatgttaattcctaaaatatctccacaattatctatgtgttgagatgtgatttgatgcatgctttttacaaataca |
307 |
Q |
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| T |
51223957 |
atctcatcattatgccaaacggttaatgttaattcctaaaatatctccacaattatctatgtgttgagatgggatttgatgcatactttttacaaataca |
51224056 |
T |
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| Q |
308 |
gtgcatagcagttattctcatattttcatgagaaaacattttggaaactaaaaagaga-nnnnnnnacctgagaattccaactgttgatgcattttgtaa |
406 |
Q |
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| T |
51224057 |
gtgcatatcagttattctcatattttcatgagaaaacattttggaaactaaaaagagattttttttacctgagaattccaactgttgatgcattttgtaa |
51224156 |
T |
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| Q |
407 |
tctgagtacatataggcaaggccaactttcga |
438 |
Q |
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| T |
51224157 |
tctgagtacatataggcaaggccaactttcga |
51224188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 5484970 - 5484917
Alignment:
| Q |
239 |
attcctaaaatatctccacaattatctatgtgttgagatgtgatttgatgcatg |
292 |
Q |
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| T |
5484970 |
attcctaaaatatctccacaaatatctaaaaggtgagatgtgattggatgcatg |
5484917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 36224292 - 36224244
Alignment:
| Q |
233 |
atgttaattcctaaaatatctccacaattatctatgtgttgagatgtga |
281 |
Q |
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| T |
36224292 |
atgttagttcctgaaatatctcctcaattatctatgtagtgagatgtga |
36224244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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