View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0580_low_1 (Length: 507)

Name: NF0580_low_1
Description: NF0580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0580_low_1
NF0580_low_1
[»] chr1 (5 HSPs)
chr1 (290-494)||(14406303-14406507)
chr1 (157-235)||(14406170-14406248)
chr1 (1-74)||(14406014-14406087)
chr1 (159-226)||(33977643-33977710)
chr1 (355-397)||(14137327-14137369)
[»] chr8 (2 HSPs)
chr8 (351-403)||(30139695-30139747)
chr8 (294-333)||(26252086-26252125)
[»] chr5 (1 HSPs)
chr5 (160-227)||(5900806-5900873)
[»] chr2 (1 HSPs)
chr2 (160-203)||(3271347-3271390)
[»] chr7 (2 HSPs)
chr7 (351-405)||(41311746-41311799)
chr7 (358-406)||(34660261-34660308)


Alignment Details
Target: chr1 (Bit Score: 150; Significance: 4e-79; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 290 - 494
Target Start/End: Original strand, 14406303 - 14406507
Alignment:
Q  290 taggggtcagtttgaaagttttaaaaaattgggaccaacttgcaaaattttnnnnnnnn-gttaagaaccaatttgatattcacattgcatagagtaagg 388  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||| |||||||||||    
T  14406303 taggggttagtttgaaagttttaaaaaattgggaccaacttgcaaaattttaaaaaaaaagttaagaaccaatttgatattcacattgtatagagtaagg 14406402  T
Q  389 aagaaatttcaaatttctagctttttaggtgtcatttgacagatgtgacactcttcaacgaaggatgtgcaagtttaaaatagtaaagcaatccaattgg 488  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  14406403 aagaaatttcaaatttctagctttt-aggtgtcatttgacagatgtgacactcttcaacgaaggacgtgcaattttaaaatagtaaagcaatccaattgg 14406501  T
Q  489 ctgtct 494  Q
    ||||||    
T  14406502 ctgtct 14406507  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 157 - 235
Target Start/End: Original strand, 14406170 - 14406248
Alignment:
Q  157 tgtattgttaacatttttgggttgcttttataaattttaaaagttttgagtcatacttgaaatttgaaaaataggtact 235  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14406170 tgtattgttaacatttttgggttgcctttataaattttaaaagttttgagtcatacttgaaatttgaaaaataggtact 14406248  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 14406014 - 14406087
Alignment:
Q  1 tgtcactttgtcgacacaccaaaggaaatctttcggggatgacatgaggcgtgtttgtatgaagtcattggaaa 74  Q
    |||||||||||| |||||| |||||||||||||    |||||||||||||||||||| ||||||| ||||||||    
T  14406014 tgtcactttgtctacacactaaaggaaatcttttcttgatgacatgaggcgtgtttggatgaagtaattggaaa 14406087  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 33977643 - 33977710
Alignment:
Q  159 tattgttaacatttttgggttgcttttataaattttaaaagttttgagtcatacttgaaatttgaaaa 226  Q
    ||||||||||||||||||| |  ||||||||| |||||| ||| || |||| |||||||| |||||||    
T  33977643 tattgttaacatttttgggctatttttataaaatttaaatgttatgggtcaaacttgaaaattgaaaa 33977710  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 397
Target Start/End: Original strand, 14137327 - 14137369
Alignment:
Q  355 aaccaatttgatattcacattgcatagagtaaggaagaaattt 397  Q
    ||||||||||| |||||||||| ||||||||| ||||||||||    
T  14137327 aaccaatttgagattcacattgtatagagtaatgaagaaattt 14137369  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 403
Target Start/End: Original strand, 30139695 - 30139747
Alignment:
Q  351 taagaaccaatttgatattcacattgcatagagtaaggaagaaatttcaaatt 403  Q
    ||||||||||||| |||||||||||| |||||||||||||| ||||| |||||    
T  30139695 taagaaccaatttaatattcacattgtatagagtaaggaagcaatttaaaatt 30139747  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 333
Target Start/End: Original strand, 26252086 - 26252125
Alignment:
Q  294 ggtcagtttgaaagttttaaaaaattgggaccaacttgca 333  Q
    |||||||||| |||||| ||||||||||||||||||||||    
T  26252086 ggtcagtttggaagtttaaaaaaattgggaccaacttgca 26252125  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 5900873 - 5900806
Alignment:
Q  160 attgttaacatttttgggttgcttttataaattttaaaagttttgagtcatacttgaaatttgaaaaa 227  Q
    |||||||||||||||||| | | |||||||||||||||||||||| ||||   |||||||| ||||||    
T  5900873 attgttaacatttttgggctacatttataaattttaaaagttttgggtcaattttgaaattggaaaaa 5900806  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 160 - 203
Target Start/End: Complemental strand, 3271390 - 3271347
Alignment:
Q  160 attgttaacatttttgggttgcttttataaattttaaaagtttt 203  Q
    ||||| || |||||||||||||||||||||||||||||||||||    
T  3271390 attgtgaatatttttgggttgcttttataaattttaaaagtttt 3271347  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 351 - 405
Target Start/End: Complemental strand, 41311799 - 41311746
Alignment:
Q  351 taagaaccaatttgatattcacattgcatagagtaaggaagaaatttcaaatttc 405  Q
    ||||||||||||||| |||||||||| || |||||| |||| |||||||||||||    
T  41311799 taagaaccaatttga-attcacattgtattgagtaaagaaggaatttcaaatttc 41311746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 406
Target Start/End: Original strand, 34660261 - 34660308
Alignment:
Q  358 caatttgatattcacattgcatagagtaaggaagaaatttcaaatttct 406  Q
    |||||||| ||||||||||  ||||||||||||||||||| ||||||||    
T  34660261 caatttgagattcacattgtttagagtaaggaagaaattt-aaatttct 34660308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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