View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0580_low_3 (Length: 430)

Name: NF0580_low_3
Description: NF0580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0580_low_3
NF0580_low_3
[»] chr3 (8 HSPs)
chr3 (12-401)||(19256428-19256817)
chr3 (12-219)||(19257881-19258089)
chr3 (11-101)||(36860691-36860777)
chr3 (11-106)||(36866587-36866678)
chr3 (284-390)||(42845807-42845914)
chr3 (280-369)||(13611798-13611887)
chr3 (285-373)||(14352306-14352395)
chr3 (303-375)||(7574807-7574879)
[»] chr4 (4 HSPs)
chr4 (284-366)||(23021414-23021496)
chr4 (295-366)||(3252063-3252134)
chr4 (285-366)||(40956683-40956764)
chr4 (284-358)||(37813265-37813336)
[»] chr7 (4 HSPs)
chr7 (280-372)||(1304603-1304695)
chr7 (322-380)||(16174838-16174896)
chr7 (280-398)||(12244545-12244659)
chr7 (316-369)||(8272564-8272617)
[»] chr6 (3 HSPs)
chr6 (291-375)||(12202900-12202984)
chr6 (284-376)||(26277659-26277752)
chr6 (284-318)||(6434326-6434360)
[»] chr8 (3 HSPs)
chr8 (281-344)||(30886408-30886472)
chr8 (284-366)||(18969348-18969431)
chr8 (284-365)||(18947109-18947191)
[»] chr2 (1 HSPs)
chr2 (280-366)||(23082440-23082528)


Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 12 - 401
Target Start/End: Complemental strand, 19256817 - 19256428
Alignment:
Q  12 agctgttgcttactgagaaatgggtcacaagaacatgtttgtttgtttggttcatctctgcacttcttcttggttgcttgctaccatcaaatcaaactta 111  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19256817 agctgctgcttactgagaaatgggtcacaagaacatgtttgtttgtttgtttcatctctgcacttcttcttggttgcttgctaccatcaaatcaaactta 19256718  T
Q  112 cttgccatcaaagctaattattacattcttatgttgttcacataatatgaaattaatgtgcannnnnnnagtggggaatcaatatgaattattcaccaga 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||| ||||||||||||||||||||||||    
T  19256717 cttgccatcaaagctaattattacattcttatgttgttcacataatatgaaattaatgtgcatttttttagtgggaaatcaatatgaattattcaccaga 19256618  T
Q  212 ttattattatatacattgatgtaacttgtaatctctaatgtcaannnnnnnnnnattctacaaaaagggagtcatatatttaatttacatgtactaaaaa 311  Q
    ||||||||||||||||||||||||||||||||||||||||| |            ||||| |||||||||||||||||||||||||||||||||||||||    
T  19256617 ttattattatatacattgatgtaacttgtaatctctaatgtaattttttttttccttctataaaaagggagtcatatatttaatttacatgtactaaaaa 19256518  T
Q  312 taagtttatgatgttaatgtacttttatctcacactgaatctatttgatgcaataaaattaccttattacgaggttttcattgttaggaa 401  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  19256517 taagtgtatgatgttaatgtacttttatctcacactgaatctatttgatgcaataaaactaccttattacgaggttttcattgttaggaa 19256428  T

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Target: chr3; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 19257881 - 19258089
Alignment:
Q  12 agctgttgcttactgagaaatgggtcacaagaacatgtttgtttgtttggttcatctctgcacttcttcttggttgcttgctaccatcaaatcaaactta 111  Q
    ||||| ||||||||  ||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19257881 agctgctgcttactatgaaatgggtcacaagaataggtttgtttgtttgtttcatctctgcacttcttcttggttgcttgctaccatcaaatcaaactta 19257980  T
Q  112 cttgccatcaaagctaattattacattcttatgttgttcacataatatgaaattaatgtgca-nnnnnnnagtggggaatcaatatgaattattcaccag 210  Q
    |||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||        || ||| |||||||||||||||||||||||    
T  19257981 cttgccataaaagctaattattacattcttctgttgttcacaaaatatgaaattaatgtgcattttatttagggggaaatcaatatgaattattcaccag 19258080  T
Q  211 attattatt 219  Q
    |||||||||    
T  19258081 attattatt 19258089  T

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Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 11 - 101
Target Start/End: Original strand, 36860691 - 36860777
Alignment:
Q  11 tagctgttgcttactgagaaatgggtcacaagaacatgtttgtttgtttggttcatctctgcacttcttcttggttgcttgctaccatcaa 101  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||    |||||||||||||||||||| |||||||||||||||||    
T  36860691 tagctgctgcttactgagaaatgggtcacaagaacaggtttgtttgttt----catctctgcacttcttcttgcttgcttgctaccatcaa 36860777  T

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Target: chr3; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 36866587 - 36866678
Alignment:
Q  11 tagctgttgcttactgagaaatgggtcacaagaacatgtttgtttgtttggttcatctctgcacttcttcttggttgcttgctaccatcaaatcaa 106  Q
    |||||| ||||||||| ||||||||||||||||||| ||||||||||||    ||||||||| ||||||||||||||| |||||||||||||||||    
T  36866587 tagctgctgcttactgcgaaatgggtcacaagaacaggtttgtttgttt----catctctgcccttcttcttggttgcctgctaccatcaaatcaa 36866678  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 284 - 390
Target Start/End: Original strand, 42845807 - 42845914
Alignment:
Q  284 catatatttaatttacatgtactaaaaataagttta-tgatgttaatgtacttttatctcacactgaatctatttgatgcaataaaattaccttattacg 382  Q
    ||||||||||||| |||| |||| |||||||||||  || |||  ||||  |||||||||||| ||||||||||||||||||||||| ||| ||| || |    
T  42845807 catatatttaattaacatatactgaaaataagttttgtggtgtgcatgtgtttttatctcacattgaatctatttgatgcaataaaactacattactatg 42845906  T
Q  383 aggttttc 390  Q
    || |||||    
T  42845907 agtttttc 42845914  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 280 - 369
Target Start/End: Complemental strand, 13611887 - 13611798
Alignment:
Q  280 gagtcatatatttaatttacatgtactaaaaataagtttatgatgttaatgtacttttatctcacactgaatctatttgatgcaataaaa 369  Q
    |||| |||||||| |||||| | |||||||||||||||||| ||||  ||||| |||| ||||| |||   |||||||||||||||||||    
T  13611887 gagtaatatatttgatttacttttactaaaaataagtttataatgtacatgtatttttttctcagacttggtctatttgatgcaataaaa 13611798  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 285 - 373
Target Start/End: Original strand, 14352306 - 14352395
Alignment:
Q  285 atatatttaatttaca-tgtactaaaaataagtttatgatgttaatgtacttttatctcacactgaatctatttgatgcaataaaattac 373  Q
    ||||||| |||||||| | |||| |||| |||||||||||||| |  ||||||||||||||| ||| ||||||||||| ||| |||||||    
T  14352306 atatattcaatttacactttactgaaaacaagtttatgatgttcacttacttttatctcacattgagtctatttgatgtaatgaaattac 14352395  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 375
Target Start/End: Original strand, 7574807 - 7574879
Alignment:
Q  303 tactaaaaataagtttatgatgttaatgtacttttatctcacactgaatctatttgatgcaataaaattacct 375  Q
    ||||||||||||  |||||||||| || || |||||||||| | |  ||||||||||||||||| || |||||    
T  7574807 tactaaaaataatattatgatgttcatttatttttatctcataatagatctatttgatgcaatagaactacct 7574879  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 284 - 366
Target Start/End: Original strand, 23021414 - 23021496
Alignment:
Q  284 catatatttaatttacatgtactaaaaataagtttatgatgttaatgtacttttatctcacactgaatctatttgatgcaata 366  Q
    |||||||||||||||||| | || ||||||||||||||||||| || |||||||||||||||||  |||||||||||||||||    
T  23021414 catatatttaatttacattttctgaaaataagtttatgatgttcatatacttttatctcacactagatctatttgatgcaata 23021496  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 295 - 366
Target Start/End: Complemental strand, 3252134 - 3252063
Alignment:
Q  295 tttacatgtactaaaaataagtttatgatgttaatgtacttttatctcacactgaatctatttgatgcaata 366  Q
    ||||||| ||||||||||||  |||||||||| ||||| |||||||||||| || |||||||||||||||||    
T  3252134 tttacatttactaaaaataatgttatgatgttcatgtatttttatctcacaatggatctatttgatgcaata 3252063  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 366
Target Start/End: Complemental strand, 40956764 - 40956683
Alignment:
Q  285 atatatttaatttacatgtactaaaaataagtttatgatgttaatgtacttttatctcacactgaatctatttgatgcaata 366  Q
    ||||||||| ||||||| |||||||| ||| ||||||||||| ||||| |||||||||| | ||  ||||||||||||||||    
T  40956764 atatatttactttacatttactaaaagtaattttatgatgttcatgtatttttatctcataatgggtctatttgatgcaata 40956683  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 358
Target Start/End: Original strand, 37813265 - 37813336
Alignment:
Q  284 catatatttaatttacatgtactaaaaataagtttatgatgttaatgtacttttatctcacactgaatctatttg 358  Q
    ||||||||||||||| ||   ||||| |||| ||||||||||| |||  |||||||||||||||| ||| |||||    
T  37813265 catatatttaatttatat---ctaaatataactttatgatgtttatgagcttttatctcacactggatcaatttg 37813336  T

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Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 280 - 372
Target Start/End: Complemental strand, 1304695 - 1304603
Alignment:
Q  280 gagtcatatatttaatttacatgtactaaaaataagtttatgatgttaatgtacttttatctcacactgaatctatttgatgcaataaaatta 372  Q
    |||||||||||||||||||||| || | ||||||||||||| ||||| |||| |||| |||||||||||  ||||||||||| ||||||||||    
T  1304695 gagtcatatatttaatttacatttagtgaaaataagtttatcatgttcatgtgctttcatctcacactgggtctatttgatggaataaaatta 1304603  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 380
Target Start/End: Complemental strand, 16174896 - 16174838
Alignment:
Q  322 atgttaatgtacttttatctcacactgaatctatttgatgcaataaaattaccttatta 380  Q
    ||||| ||||| |||||||||||||||  |||||||||||||||| || ||||||||||    
T  16174896 atgttcatgtatttttatctcacactgggtctatttgatgcaatagaactaccttatta 16174838  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 280 - 398
Target Start/End: Complemental strand, 12244659 - 12244545
Alignment:
Q  280 gagtcatatatttaatttacatgtactaaaaataagtttatgatgttaatgtacttttatctcacactgaatctatttgatgcaataaaattaccttatt 379  Q
    ||||||| |||||||||||||| ||||| ||||    |||  ||||| ||||| ||||||||| ||||   ||||||||||||||||||| ||||||  |    
T  12244659 gagtcatgtatttaatttacatctactataaat----ttacaatgtttatgtagttttatctctcacttggtctatttgatgcaataaaactacctttct 12244564  T
Q  380 acgaggttttcattgttag 398  Q
    | ||| ||||| |||||||    
T  12244563 atgagtttttctttgttag 12244545  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 369
Target Start/End: Complemental strand, 8272617 - 8272564
Alignment:
Q  316 tttatgatgttaatgtacttttatctcacactgaatctatttgatgcaataaaa 369  Q
    ||||||||||| |||| ||||||| ||||  ||| |||||||||||||||||||    
T  8272617 tttatgatgttcatgtgcttttatgtcacgatgagtctatttgatgcaataaaa 8272564  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 375
Target Start/End: Complemental strand, 12202984 - 12202900
Alignment:
Q  291 ttaatttacatgtactaaaaataagtttatgatgttaatgtacttttatctcacactgaatctatttgatgcaataaaattacct 375  Q
    ||||||||||| ||||||||||||  |||||||||| || || |||||||||| | |  ||||||||||||||||| || |||||    
T  12202984 ttaatttacatttactaaaaataatattatgatgttcatttatttttatctcataatagatctatttgatgcaatagaactacct 12202900  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 376
Target Start/End: Original strand, 26277659 - 26277752
Alignment:
Q  284 catatatttaatttacatgtactaaaaataag-tttatgatgttaatgtacttttatctcacactgaatctatttgatgcaataaaattacctt 376  Q
    |||||| ||||||||||| |||||||| |||| ||||||||||| || || |||||||||||| ||| | ||||  |||||||| || ||||||    
T  26277659 catatacttaatttacatttactaaaagtaagttttatgatgttcatatatttttatctcacattgagtttattcaatgcaatagaactacctt 26277752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 318
Target Start/End: Original strand, 6434326 - 6434360
Alignment:
Q  284 catatatttaatttacatgtactaaaaataagttt 318  Q
    |||||||||||||||||| ||||||||||||||||    
T  6434326 catatatttaatttacatttactaaaaataagttt 6434360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 344
Target Start/End: Complemental strand, 30886472 - 30886408
Alignment:
Q  281 agtcatatatttaatttacatgtactaaaaataag-tttatgatgttaatgtacttttatctcac 344  Q
    |||||||| |||||||||||| ||||| ||||||| ||||||||||| | || ||||||||||||    
T  30886472 agtcatatgtttaatttacatttactacaaataagctttatgatgtttaagtgcttttatctcac 30886408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 366
Target Start/End: Complemental strand, 18969431 - 18969348
Alignment:
Q  284 catatatttaatttacatgtactaaaaataagtt-tatgatgttaatgtacttttatctcacactgaatctatttgatgcaata 366  Q
    ||||||||||| |||||| || |||||||||||  || |||| | ||||  || ||||||||||||| ||||||||||||||||    
T  18969431 catatatttaacttacatttattaaaaataagtactaggatgatcatgtgtttctatctcacactgagtctatttgatgcaata 18969348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 365
Target Start/End: Original strand, 18947109 - 18947191
Alignment:
Q  284 catatatttaatttacatgtactaaaaataagt-ttatgatgttaatgtacttttatctcacactgaatctatttgatgcaat 365  Q
    ||||||||||| |||||| || ||||||||||| ||| |||| | ||||  || |||||||||| || |||||||||||||||    
T  18947109 catatatttaacttacatttattaaaaataagtattacgatgatcatgtgtttctatctcacaccgagtctatttgatgcaat 18947191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 366
Target Start/End: Original strand, 23082440 - 23082528
Alignment:
Q  280 gagtcatatatttaattta-catgtactaaaaataag-tttatgatgttaatgtacttttatctcacactgaatctatttgatgcaata 366  Q
    ||||| ||||||||||||| ||| ||||||||||||| |||||| |||| | || ||||||||||||  || |||||||| ||||||||    
T  23082440 gagtcctatatttaatttaacatttactaaaaataagctttatggtgttcaagtgcttttatctcaccttggatctatttcatgcaata 23082528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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