View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0580_low_6 (Length: 323)
Name: NF0580_low_6
Description: NF0580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0580_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 30 - 311
Target Start/End: Complemental strand, 36472553 - 36472280
Alignment:
| Q |
30 |
gtttacgtcgtgtctatgtatgtgtcggtgctttatatatctaggttaatcaacgaagcatatatatatggcctcaaagttgcattgtgtcttgagaatc |
129 |
Q |
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| T |
36472553 |
gtttacgtcgtgtctatgtatgtgtcg-tgctttatatatccaggttaatcaacgaagcatatatat--ggcctcaaagttg-----tgtcttgagaatc |
36472462 |
T |
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| Q |
130 |
aatgaaatgtatataataataggatgggtatgactttcttctttttcccttgttttttcaggtacctatagctgtaggagtgagtggatatgaggctata |
229 |
Q |
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| T |
36472461 |
aatgaaatgtatataataataggatgggtatgactttcttctttttcccttgttttttcaggtacctatagctataggagtgagtggatatgaggctata |
36472362 |
T |
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| Q |
230 |
cttttatacaaaggaaaaagagttatagcttccaatggagatcaaggaataaattggagtgtgaagcagttaattctatatt |
311 |
Q |
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| T |
36472361 |
cttttatacaaaggaaaaagagttatagcttccaatggagatcaaggaataaattggagtgtgaagcagttaattctatatt |
36472280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 178 - 311
Target Start/End: Complemental strand, 36463263 - 36463130
Alignment:
| Q |
178 |
cttgttttttcaggtacctatagctgtaggagtgagtggatatgaggctatacttttatacaaaggaaaaagagttatagcttccaatggagatcaagga |
277 |
Q |
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|||||||||| |||||||||||||||||||||| ||| |||||||||| | |||||||||||||| |||| ||||||||||||||| |||||||||||| |
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| T |
36463263 |
cttgtttttttaggtacctatagctgtaggagtaagttcatatgaggctgtgcttttatacaaagggaaaaaagttatagcttccaagggagatcaagga |
36463164 |
T |
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| Q |
278 |
ataaattggagtgtgaagcagttaattctatatt |
311 |
Q |
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| T |
36463163 |
ataaattggagtgtgaagcagttaattctatatt |
36463130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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