View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0582_high_2 (Length: 412)
Name: NF0582_high_2
Description: NF0582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0582_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 6 - 318
Target Start/End: Original strand, 34423410 - 34423722
Alignment:
| Q |
6 |
ctccaacaatatgaaatgtaattttaagtgatgtaaattttggagctacatgggaacctataacctgtagttctcatttctgcattaaaaactattcatg |
105 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34423410 |
ctcctacaatatgaaatgtaattttaagtggtgtaaattttggagctacatgggaacctataacctgtagttctcatttctgcattaaaaactattcatg |
34423509 |
T |
|
| Q |
106 |
cattcaaatgagctctcagaacgttgctttgcttttgaatgatgatatcaacgactgttaatgatgaattgcttaataaatagtgctacaaagcttatat |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34423510 |
cattcaaatgagctctcagaacgttgctttgcttttgaatgatgatatcaacgactgttaatgatgaattgcttaatgaatagtgctacaaagcttatat |
34423609 |
T |
|
| Q |
206 |
ggcagagtctagggaaggttgaacccattgcaggtctattctgttgtacgatgagaaccttctgtggctaatgtatagtagtagcagtttatttgttaaa |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34423610 |
ggcagagtctagggaaggttgaacccattgcaggtctattctgttgtatgatgagaaccttctgtggctaatgtatagtagtagcagtttatttgttaaa |
34423709 |
T |
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| Q |
306 |
gtgtaaacatggt |
318 |
Q |
| |
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||||||||||||| |
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| T |
34423710 |
gtgtaaacatggt |
34423722 |
T |
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